Browse Element(s) Details


Os.50320.1.S1_at

Description gb:AK120710.1
DB_XREF= gi:37990333
TID=Os.50320.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001K13, full insert sequence.
FL= gb:AK121429.1 gb:AK120710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4402011/11LG27/30-like gene, putative, expressed
LOC_Os08g440404/11LG27/30-like gene, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43960NANA8+27557211..27557927expressed protein
LOC_Os08g43970NANA8+27559188..27559916hypothetical protein
LOC_Os08g43980NANA8+27561131..27561862hypothetical protein
LOC_Os08g44000Os.11934.1.S1_at11/118+27562341..27567438expressed protein
LOC_Os08g44000Os.11934.1.S2_at11/118+27562341..27567438expressed protein
LOC_Os08g44010Os.49806.1.S1_at11/118+27570560..27574386expressed protein
LOC_Os08g44010Os.49806.2.S1_x_at10/118+27570560..27574386expressed protein
LOC_Os08g44020Os.50320.1.S1_at11/118+27581198..27585830LG27/30-like gene, putative, expressed
LOC_Os08g44030OsAffx.29653.1.S1_at11/118+27587099..27587425hypothetical protein
LOC_Os08g44040Os.50320.1.S1_at4/118+27591651..27598426LG27/30-like gene, putative, expressed
LOC_Os08g44050Os.21255.1.S1_x_at11/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.21255.3.S1_x_at2/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.2.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.3.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44060OsAffx.29654.1.S1_at11/118+27609700..27609912hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50320.1.S1_at--610--9172Chr08:27598054..27598198 (25 bp)
TGCCGAGTTGCAGGTTCGTTTCAAC
LOC_Os08g44040
Os.50320.1.S1_at--675--4791Chr08:27585270..27585294 (25 bp)
GCTCCTCACTTCACAACTGGGTTGA
LOC_Os08g44020
Os.50320.1.S1_at--698--2172Chr08:27598251..27598275 (25 bp)
ACACGATTGCGAGGCACGGGATCCA
LOC_Os08g44040
Os.50320.1.S1_at--771--672Chr08:27598331..27598355 (25 bp)
ATGAACACCATCTACCTGAAGCAGC
LOC_Os08g44040
Os.50320.1.S1_at--293--5392Chr08:27598348..27598372 (25 bp)
GAAGCAGCCCAGGAACCAGAGTCCA
LOC_Os08g44040
Os.50320.1.S1_at--141--5931Chr08:27585483..27585507 (25 bp)
GGCCAGTCTTTAGCTAGTTTAACCA
LOC_Os08g44020
Os.50320.1.S1_at--421--1191Chr08:27585498..27585522 (25 bp)
AGTTTAACCAGCCTCACCTGTATGG
LOC_Os08g44020
Os.50320.1.S1_at--875--292Chr08:27598472..27598496 (25 bp)
ATAGCTGTACTATGCCTAGGTATGC
NONE
Os.50320.1.S1_at--127--6551Chr08:27585558..27585582 (25 bp)
GATTATGACCCAGATATTCCCATCC
LOC_Os08g44020
Os.50320.1.S1_at--294--9812Chr08:27585651..27585675 (25 bp)
TAACCCCGGATTTAGCTTATCTGAT
LOC_Os08g44020
Os.50320.1.S1_at--962--2071Chr08:27585784..27585808 (25 bp)
ACATTTCCCTGCTGTTTTAACTCTA
LOC_Os08g44020
Target Sequence 
TGCCGAGTTGCAGGTTCGTTTCAACGATCAGGACAGAACTGCTCCTCACTTCACAACTGGGTTGATTGGGAAAGACAACA
CGATTGCGAGGCACGGGATCCATGGGCTGTACTGGCTGTTCAACATCGATGTGAGTGGAGCTTGGCTTGTTCAAGGGATG
AACACCATCTACCTGAAGCAGCCCAGGAACCAGAGTCCATTTCAGGGACTGATGTATGACTACCTGAGAATGGAAGGTCC
TTCTGGCAGCTAAGGCCAGTCTTTAGCTAGTTTAACCAGCCTCACCTGTATGGCTAGTATAGCTGTACTATGCCTAGGTA
TGCAGTACGATTATGACCCAGATATTCCCATCCACTAATATTCTATTTAGTGTGCTTTAAAGTTTAATCTTATTTTACCA
AAAAAAATCCTGGGTTTTGTCTAACCCCGGATTTAGCTTATCTGATTTAGGTTAGCTGGTAAAGATGTAAGCTGCCGAAA
NTTCGCAGAGCATCAGAATTCAGNAAACGATTAGATATACTCTAAATCGGTGATATGTATTGGAAAAAGAAATAACATTT
CCCTGCTGTTTTAACTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis