Browse Element(s) Details


Os.49806.2.S1_x_at

Description gb:AK112044.1
DB_XREF= gi:37988707
TID=Os.49806.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C03, full insert sequence.
FL= gb:AK112044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4401010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43920OsAffx.6128.1.S1_at1/118+27548463..27549170hypothetical protein
LOC_Os08g43930OsAffx.6128.1.S1_at2/118+27550163..27550930expressed protein
LOC_Os08g43940OsAffx.6128.1.S1_at1/118+27551952..27552656hypothetical protein
LOC_Os08g43950OsAffx.17507.1.S1_at11/118+27553575..27554741hypothetical protein
LOC_Os08g43960NANA8+27557211..27557927expressed protein
LOC_Os08g43970NANA8+27559188..27559916hypothetical protein
LOC_Os08g43980NANA8+27561131..27561862hypothetical protein
LOC_Os08g44000Os.11934.1.S1_at11/118+27562341..27567438expressed protein
LOC_Os08g44000Os.11934.1.S2_at11/118+27562341..27567438expressed protein
LOC_Os08g44010Os.49806.1.S1_at11/118+27570560..27574386expressed protein
LOC_Os08g44010Os.49806.2.S1_x_at10/118+27570560..27574386expressed protein
LOC_Os08g44020Os.50320.1.S1_at11/118+27581198..27585830LG27/30-like gene, putative, expressed
LOC_Os08g44030OsAffx.29653.1.S1_at11/118+27587099..27587425hypothetical protein
LOC_Os08g44040Os.50320.1.S1_at4/118+27591651..27598426LG27/30-like gene, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49806.2.S1_x_at--165--2291Chr08:27573776..27573800 (25 bp)
AAATGAAGCTGCATGTTCTCTCCGT
LOC_Os08g44010
Os.49806.2.S1_x_at--680--731Chr08:27573788..27573812 (25 bp)
ATGTTCTCTCCGTTGTAAGGGCACA
LOC_Os08g44010
Os.49806.2.S1_x_at--1092--9771Chr08:27573803..27573827 (25 bp)
TAAGGGCACATAACTCCACTTCTTT
LOC_Os08g44010
Os.49806.2.S1_x_at--743--2051Chr08:27573820..27573949 (25 bp)
ACTTCTTTGCTCGATTTTCTCCTTG
LOC_Os08g44010
Os.49806.2.S1_x_at--581--10691Chr08:27573947..27573971 (25 bp)
TTGCCATCCTATATACTGTACTCTG
LOC_Os08g44010
Os.49806.2.S1_x_at--364--8831Chr08:27573996..27574020 (25 bp)
TGATTCGACAGCTTGTGACCCCAGA
LOC_Os08g44010
Os.49806.2.S1_x_at--97--8731Chr08:27574070..27574094 (25 bp)
TGTCTCATATGATCTGCCACTCTTG
LOC_Os08g44010
Os.49806.2.S1_x_at--482--3331Chr08:27574087..27574111 (25 bp)
CACTCTTGTGATTCAGGCCAGCTGT
LOC_Os08g44010
Os.49806.2.S1_x_at--282--331Chr08:27574144..27574168 (25 bp)
ATACTGCTCCTCGAGTGATTCTTGA
LOC_Os08g44010
Os.49806.2.S1_x_at--27--6411Chr08:27574262..27574286 (25 bp)
GATCTGAGCTTCTGTTTTTCATTCG
LOC_Os08g44010
Os.49806.2.S1_x_at--75--7511NONE
GTGGTTCCCTTACCTTAGCAAAGAT
NONE
Target Sequence 
AAATGAAGCTGCATGTTCTCTCCGTTGTAAGGGCACATAACTCCACTTCTTTGCTCGATTTTCTCCTTGCCATCCTATAT
ACTGTACTCTGGTACATGGAGTTGATGCGATGGCCTGATTCGACAGCTTGTGACCCCAGAACAATAGCAAGCCAATAATG
TTTCAGTAACCATCTTGGCAGAAATCCAGTGTCTCATATGATCTGCCACTCTTGTGATTCAGGCCAGCTGTAATTGCAAA
ATTCAGCCTGGTACAATTGCCAAATACTGCTCCTCGAGTGATTCTTGAATGTCATATATCTGAGAAAGGTTGGTGTCAAT
TGTTGCGTTATGTGGTGAAGTACAACCGATCTGAATTTTGTAGAACTGTTGAGATTGACAAGATCTGAGCTTCTGTTTTT
CATTCGATTTTTCACTGTATGAGTGGTTCCCTTACCTTAGCAAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49806.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis