Browse Element(s) Details


OsAffx.6127.1.S1_at

Description tigr:9636.m04455
TID=OsAffx.6127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4375011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43690OsAffx.6126.1.S1_x_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43690OsAffx.6126.1.S1_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43700NANA8+27489503..27490182auxin induced protein, putative, expressed
LOC_Os08g43710OsAffx.29536.5.S1_x_at3/118+27493173..27494129transposon protein, putative, unclassified
LOC_Os08g43720NANA8+27497774..27498361hypothetical protein
LOC_Os08g43730OsAffx.17504.1.S1_at11/118+27502139..27506192expressed protein
LOC_Os08g43740OsAffx.29649.1.S1_at11/118+27507831..27508625hypothetical protein
LOC_Os08g43750OsAffx.6127.1.S1_at11/118+27510060..27511233expressed protein
LOC_Os08g43760OsAffx.29650.1.S1_at11/118+27512365..27513410expressed protein
LOC_Os08g43770OsAffx.17505.1.S1_at11/118+27514095..27514799expressed protein
LOC_Os08g43780NANA8+27516760..27517617expressed protein
LOC_Os08g43790NANA8+27518803..27519534hypothetical protein
LOC_Os08g43800OsAffx.6128.1.S1_at2/118+27520655..27521359hypothetical protein
LOC_Os08g43810OsAffx.6128.1.S1_at1/118+27523096..27523803hypothetical protein
LOC_Os08g43820OsAffx.6128.1.S1_at1/118+27524756..27525463hypothetical protein
LOC_Os08g43830OsAffx.6128.1.S1_at2/118+27526382..27527089hypothetical protein
LOC_Os08g43840OsAffx.29651.1.S1_at10/118+27529906..27531623hypothetical protein
LOC_Os08g43850OsAffx.6128.1.S1_at11/118+27532110..27535017hypothetical protein
LOC_Os08g43860OsAffx.6128.1.S1_at2/118+27535493..27536200hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6127.1.S1_at--974--2291Chr08:27510644..27510668 (25 bp)
AAATGGTGTCTGACGCTCTGAGGAG
LOC_Os08g43750
OsAffx.6127.1.S1_at--682--10851Chr08:27510671..27510695 (25 bp)
TTGGTGGCGTCTACAACTGCATCAA
LOC_Os08g43750
OsAffx.6127.1.S1_at--53--1051Chr08:27510767..27510791 (25 bp)
AGGTGCTGGATCTTTGCAGCGCCAT
LOC_Os08g43750
OsAffx.6127.1.S1_at--897--651Chr08:27510790..27510814 (25 bp)
ATGCAAGAGATGTTCGCTGACCTGA
LOC_Os08g43750
OsAffx.6127.1.S1_at--119--9351Chr08:27510803..27510827 (25 bp)
TCGCTGACCTGAAGATGACCATCCA
LOC_Os08g43750
OsAffx.6127.1.S1_at--832--8051Chr08:27510853..27510877 (25 bp)
GGAGACCATGCAGTTGTTCAAGTGA
LOC_Os08g43750
OsAffx.6127.1.S1_at--723--1111Chr08:27510873..27510897 (25 bp)
AGTGAAGGCTCAGTCATACATCCGC
LOC_Os08g43750
OsAffx.6127.1.S1_at--773--1491Chr08:27510934..27510958 (25 bp)
AGCAACAAGTCTACCTCTGATGAGG
LOC_Os08g43750
OsAffx.6127.1.S1_at--246--5911Chr08:27511027..27511051 (25 bp)
GAGCTCCTGTCGAAGCAAATCTCCA
LOC_Os08g43750
OsAffx.6127.1.S1_at--731--5171Chr08:27511064..27511088 (25 bp)
GCAAGTGGTCTCTTATCTCCAAATC
LOC_Os08g43750
OsAffx.6127.1.S1_at--745--451Chr08:27511078..27511102 (25 bp)
ATCTCCAAATCGTTCCAGAAGGCCA
LOC_Os08g43750
Target Sequence 
AAATGGTGTCTGACGCTCTGAGGAGGCTTGGTGGCGTCTACAACTGCATCAACGAGATCATAAGCTTGCATAGCAACCAA
GCACATGGCAAGAAGCTGGAGGAAGAGATGGAGCGGTCTCTGGAGGTGCTGGATCTTTGCAGCGCCATGCAAGAGATGTT
CGCTGACCTGAAGATGACCATCCAAGAGCTGCAGATGGTTCTCAACAGGGGAGACCATGCAGTTGTTCAAGTGAAGGCTC
AGTCATACATCCGCCTGGTGAAGAAGGCTAAGCATCACCTGAAGAAGGCCAGCAACAAGTCTACCTCTGATGAGGATGGA
AGGCTTGTCAGTCTGTTGACAACAGCGAGAGGGATCACTGCCTCGGTCCTGAAATCTGCCCTAGAGCTCCTGTCGAAGCA
AATCTCCACCTGCAATCCAAGCAAGTGGTCTCTTATCTCCAAATCGTTCCAGAAGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis