Browse Element(s) Details


Os.6123.1.S1_at

Description gb:AK105338.1
DB_XREF= gi:32990547
TID=Os.6123.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F06, full insert sequence.
FL= gb:AK105338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4367011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43609NANA8+27446144..27446343NA
LOC_Os08g43620OsAffx.17500.1.S1_at11/118+27450208..27450715expressed protein
LOC_Os08g43630Os.20177.1.S1_at11/118+27453256..27453905expressed protein
LOC_Os08g43630OsAffx.29648.1.S1_x_at11/118+27453256..27453905expressed protein
LOC_Os08g43640Os.8718.1.S1_at11/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43640OsAffx.16671.1.S1_at1/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43654Os.52978.1.S1_at11/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.12779.1.S1_at9/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.24650.2.S1_at1/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43670Os.6123.1.S1_at11/118+27469458..27471091Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43680Os.50768.1.S1_at11/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os08g43680OsAffx.28386.1.S1_at1/118+27476503..27482087Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os08g43690OsAffx.6126.1.S1_x_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43690OsAffx.6126.1.S1_at11/118+27486027..27488751Sodium/hydrogen exchanger family protein
LOC_Os08g43700NANA8+27489503..27490182auxin induced protein, putative, expressed
LOC_Os08g43710OsAffx.29536.5.S1_x_at3/118+27493173..27494129transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6123.1.S1_at--642--9051Chr08:27469842..27469866 (25 bp)
TGCATCGACAGCTGGCTGCTCAGGC
LOC_Os08g43670
Os.6123.1.S1_at--41--1631Chr08:27469833..27469857 (25 bp)
AGCTGGCTGCTCAGGCACGCGTCGT
LOC_Os08g43670
Os.6123.1.S1_at--178--5911Chr08:27469735..27469759 (25 bp)
GAGCTCGCATCTGGTTGGCTCGTTC
LOC_Os08g43670
Os.6123.1.S1_at--738--8471Chr08:27469720..27469744 (25 bp)
TGGCTCGTTCGTGGTTAATTAGGCT
LOC_Os08g43670
Os.6123.1.S1_at--798--3991Chr08:27469639..27469663 (25 bp)
CGTGAGGATCACGACTGACGTGCGT
LOC_Os08g43670
Os.6123.1.S1_at--1085--8931Chr08:27469624..27469648 (25 bp)
TGACGTGCGTGTGTGTACCTACTAC
LOC_Os08g43670
Os.6123.1.S1_at--201--1751Chr08:27469601..27469625 (25 bp)
ACCTCACCTTCTTTTGATACCTTGA
LOC_Os08g43670
Os.6123.1.S1_at--1081--9951Chr08:27469584..27469608 (25 bp)
TACCTTGATTCGTTTTGGCGTAGTA
LOC_Os08g43670
Os.6123.1.S1_at--501--9991Chr08:27469551..27469575 (25 bp)
TAGCGGATACTTGCATTATACTAGT
LOC_Os08g43670
Os.6123.1.S1_at--69--10191Chr08:27469494..27469518 (25 bp)
TATATACTTGTACATGGAGACCTTG
LOC_Os08g43670
Os.6123.1.S1_at--1141--3491Chr08:27469482..27469506 (25 bp)
CATGGAGACCTTGTGATTAACATAA
LOC_Os08g43670
Target Sequence 
TGCATCGACAGCTGGCTGCTCAGGCACGCGTCGTGCCCCCTGTGCCGGCGCACGGTGGTCGCCGCCGCCGTCGCCGTCGA
CGACGTCGTCGTCGGCTGAGCTGGCGCGAGCTCGCATCTGGTTGGCTCGTTCGTGGTTAATTAGGCTTAAGCTAGAAGAT
TAGTGAGAAGGGCGTGCAGTGCACGGCACGCCGCCGGCGACGGCGTGAGGATCACGACTGACGTGCGTGTGTGTACCTAC
TACCTCACCTTCTTTTGATACCTTGATTCGTTTTGGCGTAGTACATATGTNTAGCGGATACTTGCATTATACTAGTATAT
ACACACACACNNTTGTATGTATTGTAGATTTATATACTTGTACATGGAGACCTTGTGATTAACATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis