Browse Element(s) Details


Os.9568.1.S1_at

Description gb:AK121924.1
DB_XREF= gi:37991547
TID=Os.9568.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106F17, full insert sequence.
FL= gb:AK121924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4888011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48870Os.11036.1.S1_at11/115+27951182..27956618Auxin response factor 3, putative, expressed
LOC_Os05g48880Os.9568.1.S1_at11/115+27956918..27959423expressed protein
LOC_Os05g48890OsAffx.15160.1.S1_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48890OsAffx.15160.1.S1_s_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48900Os.53704.1.S1_x_at11/115+27968486..27969669Fasciclin domain containing protein, expressed
LOC_Os05g48910OsAffx.21756.3.S1_x_at5/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910Os.13704.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.21756.2.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.20387.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48920NANA5+27980193..27980846hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9568.1.S1_at--611--4871Chr05:27957491..27957515 (25 bp)
GCTATTTGTGTTGTTCAGTGCGGAT
LOC_Os05g48880
Os.9568.1.S1_at--274--3471Chr05:27957318..27957342 (25 bp)
CAGGTTGCCCAAGAGTCTTACAAGT
LOC_Os05g48880
Os.9568.1.S1_at--27--2951Chr05:27957291..27957315 (25 bp)
GAAGGGTTACCTGTGATTCCCTCCT
LOC_Os05g48880
Os.9568.1.S1_at--961--71Chr05:27957276..27957300 (25 bp)
ATTCCCTCCTCCAGGTTGAAATCGA
LOC_Os05g48880
Os.9568.1.S1_at--998--6311Chr05:27957253..27957277 (25 bp)
GATGAATTACGCTCGTCAGGGCCTT
LOC_Os05g48880
Os.9568.1.S1_at--630--1571Chr05:27957166..27957190 (25 bp)
AGCTCTAGAAAATGACTGCCCTTTT
LOC_Os05g48880
Os.9568.1.S1_at--1036--2971Chr05:27957076..27957100 (25 bp)
AATGTGGTTGCTACGTCAGTCTGAT
LOC_Os05g48880
Os.9568.1.S1_at--618--1151Chr05:27957059..27957083 (25 bp)
AGTCTGATCATCTGGCCCTGCTTAG
LOC_Os05g48880
Os.9568.1.S1_at--609--4531Chr05:27957045..27957069 (25 bp)
GCCCTGCTTAGCATCTGTTGATTCT
LOC_Os05g48880
Os.9568.1.S1_at--160--8811Chr05:27957021..27957045 (25 bp)
TGTTCCCCTCTAACCATTATTTGCA
LOC_Os05g48880
Os.9568.1.S1_at--297--6911Chr05:27956933..27956957 (25 bp)
GTATCTGTCTCTCTCAAATCTCATA
LOC_Os05g48880
Target Sequence 
GCTATTTGTGTTGTTCAGTGCGGATTGTAGGCACATATATNNNNNNNTNNNNNTTNNNNNTNNNNTNANNNANNNNNANN
NNNNNNNGTNNNNTNNNNCAGGTTGCCCAAGAGTCTTACAAGTAGGAAGGGTTACCTGTGATTCCCTCCTCCAGGTTGAA
ATCGATGAATTACGCTCGTCAGGGCCTTCTGCTCCAGACGCTGAAAACATAGAGGATTTAACTGACGACGAGGATGACAG
CAATGAATGAAGCTCTAGAAAATGACTGCCCTTTTGGATAATTATTGTAGCTAGGGACAAATTTAAACTTTTGCTGTTGT
ATTTGGTATGTTTTATGGGGAATGTGGTTGCTACGTCAGTCTGATCATCTGGCCCTGCTTAGCATCTGTTGATTCTGTTC
CCCTCTAACCATTATTTGCACTACTTGTAGCCAATGAAACATGGGCAGCTCCCACGGCAAGATGTGAGTAAAGGTCCAAT
ATTGTATCTGTCTCTCTCAAATCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis