Browse Element(s) Details


Os.56989.1.S1_at

Description gb:AK110699.1
DB_XREF= gi:32995908
TID=Os.56989.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-B06, full insert sequence.
FL= gb:AK110699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4886011/11Guanylate-binding protein, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48820Os.6086.2.S1_x_at10/115+27892394..27903100DDT domain containing protein, expressed
LOC_Os05g48830OsAffx.15157.1.S1_at11/115+27904880..27905338hypothetical protein
LOC_Os05g48840Os.27874.2.S1_x_at11/115+27906480..27907394expressed protein
LOC_Os05g48850Os.53950.1.S1_at11/115+27919894..27921728no apical meristem, putative, expressed
LOC_Os05g48860Os.56989.1.S1_at11/115+27926242..27927335Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os05g48870Os.11036.1.S1_at11/115+27951182..27956618Auxin response factor 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56989.1.S1_at--793--6671Chr05:27926940..27927073 (25 bp)
GTTGCTGAGGGACTTTTACTTGGAT
LOC_Os05g48860
Os.56989.1.S1_at--797--1331Chr05:27926885..27926909 (25 bp)
AGAGATTACCTCGAACTGGCTTTGA
LOC_Os05g48860
Os.56989.1.S1_at--27--2571Chr05:27926872..27926896 (25 bp)
AACTGGCTTTGAGGCCTGTACAAGG
LOC_Os05g48860
Os.56989.1.S1_at--147--4951Chr05:27926651..27926675 (25 bp)
GCATTACACTTGTGCGACCTGTGAA
LOC_Os05g48860
Os.56989.1.S1_at--338--8911Chr05:27926623..27926647 (25 bp)
TGAGAAAGATCTTCAGCGCCTTGAT
LOC_Os05g48860
Os.56989.1.S1_at--430--4431Chr05:27926606..27926630 (25 bp)
GCCTTGATCAACTTCCGGTATGTAT
LOC_Os05g48860
Os.56989.1.S1_at--770--10711Chr05:27926503..27926527 (25 bp)
TTGCTGCACATGTTGGACTCTTGAC
LOC_Os05g48860
Os.56989.1.S1_at--663--5711Chr05:27926488..27926512 (25 bp)
GACTCTTGACTGCTGATTGGATTTC
LOC_Os05g48860
Os.56989.1.S1_at--774--5531Chr05:27926361..27926385 (25 bp)
GAAACATCGGCCTTTTGGCCAATAT
LOC_Os05g48860
Os.56989.1.S1_at--862--3491Chr05:27926331..27926355 (25 bp)
CATGGCAATGGCACGTGTCTTTATT
LOC_Os05g48860
Os.56989.1.S1_at--920--311Chr05:27926299..27926323 (25 bp)
ATACTGGCGCTTTCACAACATGGAC
LOC_Os05g48860
Target Sequence 
GTTGCTGAGGGACTTTTACTTGGATTTGACAGAAGACAACAGAAAAATTACTCCAAGAGATTACCTCGAACTGGCTTTGA
GGCCTGTACAAGGTGGAGGAAGGGATGTATCTTCTAAGAATGCGATACGGGAGTCCATCCGTGCACTTTTTCCGGATCGA
GAATGCATTACACTTGTGCGACCTGTGAATAATGAGAAAGATCTTCAGCGCCTTGATCAACTTCCGGTATGTATTATCAT
TACTTCCTTTGAACTGCTATCAACTAGCATAACTTTTTTTGTCAAAGTTTATAGCTGCATACTTGTGCAACTTTGCTGCA
CATGTTGGACTCTTGACTGCTGATTGGATTTCAATATTTGAAAAAAAAAGGATGGTAGTTATGATATAATCTCATAGATA
ATAGCATAATCACATCTCTGAAAAATGATGATGACATAATCATGGTACCTGCCAGAAACATCGGCCTTTTGGCCAATATG
TGCACATGGCAATGGCACGTGTCTTTATTGTTGTAAATACTGGCGCTTTCACAACATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis