Browse Element(s) Details


OsAffx.15157.1.S1_at

Description tigr:9633.m04570
TID=OsAffx.15157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4883011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48800Os.11501.1.S1_at11/115+27884293..27887656fiber protein Fb2, putative, expressed
LOC_Os05g48810Os.35463.1.S1_at11/115+27889125..27891336DnaJ domain containing protein, expressed
LOC_Os05g48820Os.6086.2.S1_x_at10/115+27892394..27903100DDT domain containing protein, expressed
LOC_Os05g48830OsAffx.15157.1.S1_at11/115+27904880..27905338hypothetical protein
LOC_Os05g48840Os.27874.2.S1_x_at11/115+27906480..27907394expressed protein
LOC_Os05g48850Os.53950.1.S1_at11/115+27919894..27921728no apical meristem, putative, expressed
LOC_Os05g48860Os.56989.1.S1_at11/115+27926242..27927335Guanylate-binding protein, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15157.1.S1_at--269--4091Chr05:27904956..27904980 (25 bp)
CGAGCGCTGCGTTCGTCGATGCCAG
LOC_Os05g48830
OsAffx.15157.1.S1_at--806--4351Chr05:27904977..27905001 (25 bp)
CCAGCGGCCGAGTCGCCAAGAAGAA
LOC_Os05g48830
OsAffx.15157.1.S1_at--433--2491Chr05:27905042..27905066 (25 bp)
AACAGACCCTTCTTGGTCAGGCTTT
LOC_Os05g48830
OsAffx.15157.1.S1_at--519--9631Chr05:27905058..27905082 (25 bp)
TCAGGCTTTTGAGCGAGATTGGGCT
LOC_Os05g48830
OsAffx.15157.1.S1_at--1066--3571Chr05:27905081..27905105 (25 bp)
CTAGGCGTCCGGGTGGAAGATAATC
LOC_Os05g48830
OsAffx.15157.1.S1_at--869--5251Chr05:27905149..27905173 (25 bp)
GAATCGACGCGGAAGACAACTGCGA
LOC_Os05g48830
OsAffx.15157.1.S1_at--696--2331Chr05:27905187..27905211 (25 bp)
AAAGATCGATCTGCGACACTCCCGT
LOC_Os05g48830
OsAffx.15157.1.S1_at--262--9152Chr06:28776924..28776943 (20 bp)
TGCGACACTCCCGTGAGGAGAGAAA
NONE
OsAffx.15157.1.S1_at--394--5231Chr05:27905247..27905271 (25 bp)
GAATAGCGCTGCATGTCACACGGGA
LOC_Os05g48830
OsAffx.15157.1.S1_at--40--751Chr05:27905259..27905283 (25 bp)
ATGTCACACGGGATCGGATGGCTCG
LOC_Os05g48830
OsAffx.15157.1.S1_at--224--6231Chr05:27905275..27905299 (25 bp)
GATGGCTCGCCGTGGGACCCACAAA
LOC_Os05g48830
Target Sequence 
CGAGCGCTGCGTTCGTCGATGCCAGCGGCCGAGTCGCCAAGAAGAACGCCCTTGTCATCGCCGCCACCACGGGCGCCGAC
GACATCAACAGACCCTTCTTGGTCAGGCTTTTGAGCGAGATTGGGCTAGGCGTCCGGGTGGAAGATAATCGCAAGCGGCG
GCCGGCGAAGACACGCCGGGAAGATTGGGCGGGGAATCGACGCGGAAGACAACTGCGAGGCGATGGCTGGCAAAGATCGA
TCTGCGACACTCCCGTGAGGAGAGAAACAAGATGGGCTGCGGAGGGGGAGGGAATAGCGCTGCATGTCACACGGGATCGG
ATGGCTCGCCGTGGGACCCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis