Browse Element(s) Details


Os.6086.2.S1_x_at

Description gb:AK121237.1
DB_XREF= gi:37990860
TID=Os.6086.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095K21, full insert sequence.
FL= gb:AK121237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4882010/11DDT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48770OsAffx.15156.1.S1_at11/115+27867784..27870239expressed protein
LOC_Os05g48770OsAffx.27374.1.S1_x_at2/115+27867784..27870239expressed protein
LOC_Os05g48770Os.17546.4.S1_x_at1/115+27867784..27870239expressed protein
LOC_Os05g48780OsAffx.27373.1.S1_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48780OsAffx.27373.1.S1_s_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48790Os.17546.1.S2_a_at11/115+27875073..27878768expressed protein
LOC_Os05g48790Os.17546.4.S1_x_at10/115+27875073..27878768expressed protein
LOC_Os05g48790OsAffx.27374.1.S1_x_at9/115+27875073..27878768expressed protein
LOC_Os05g48800Os.11501.1.S1_at11/115+27884293..27887656fiber protein Fb2, putative, expressed
LOC_Os05g48810Os.35463.1.S1_at11/115+27889125..27891336DnaJ domain containing protein, expressed
LOC_Os05g48820Os.6086.2.S1_x_at10/115+27892394..27903100DDT domain containing protein, expressed
LOC_Os05g48830OsAffx.15157.1.S1_at11/115+27904880..27905338hypothetical protein
LOC_Os05g48840Os.27874.2.S1_x_at11/115+27906480..27907394expressed protein
LOC_Os05g48850Os.53950.1.S1_at11/115+27919894..27921728no apical meristem, putative, expressed
LOC_Os05g48860Os.56989.1.S1_at11/115+27926242..27927335Guanylate-binding protein, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6086.2.S1_x_at--743--691Chr05:27892920..27892944 (25 bp)
ATGAGCTGCTCCCAGATTATTCAAG
LOC_Os05g48820
Os.6086.2.S1_x_at--613--2871Chr05:27892898..27892922 (25 bp)
AAGGGACAATTCTGGGTCCAGCCCT
LOC_Os05g48820
Os.6086.2.S1_x_at--671--7271Chr05:27892883..27892907 (25 bp)
GTCCAGCCCTCTTCAGATGATGGAT
LOC_Os05g48820
Os.6086.2.S1_x_at--285--6031Chr05:27892800..27892824 (25 bp)
GAGAGGACTACGATGCAGAACAGCA
LOC_Os05g48820
Os.6086.2.S1_x_at--461--1911Chr05:27892668..27892692 (25 bp)
ACGGTACATCATATTCTTCCGAGTA
LOC_Os05g48820
Os.6086.2.S1_x_at--959--8411Chr05:27892612..27892636 (25 bp)
GGCCTTTTGAAGGTCACGTGGCAAC
LOC_Os05g48820
Os.6086.2.S1_x_at--797--7831Chr05:27892579..27892603 (25 bp)
GGTACGGTTTACATCTGGTTCTATC
LOC_Os05g48820
Os.6086.2.S1_x_at--174--491Chr05:27892567..27892591 (25 bp)
ATCTGGTTCTATCTAGCTCAAACAG
LOC_Os05g48820
Os.6086.2.S1_x_at--332--291Chr05:27892439..27892463 (25 bp)
ATCATTCCCGTACAAAGTTACCTCG
LOC_Os05g48820
Os.6086.2.S1_x_at--288--9851Chr05:27892429..27892453 (25 bp)
TACAAAGTTACCTCGTACGGCAGGA
LOC_Os05g48820
Os.6086.2.S1_x_at--924--5411Chr05:27892391..27892415 (25 bp)
GAAGCCCGATAAAATCCCATCCAAT
NONE
Target Sequence 
ATGAGCTGCTCCCAGATTATTCAAGGGACAATTCTGGGTCCAGCCCTCTTCAGATGATGGATGATGGGAGTGACGATAAT
GAAGAAGATGCCGAAGGGGATGAAGATGGTGAGGAAGATGGAGAGGACTACGATGCAGAACAGCATGTTGACGAAGACAA
CGACGATGCTGAGATGGGCGAGGATGATGTCGAGGACAATGACGATGGCGATGGTGGCGGTGGTGGAGCGGAGAACGGTG
ACGAGGATGAAGACGGTACATCATATTCTTCCGAGTATAGCGAATAAAACGAATGAATTAAGAAGTCTGGCCTTTTGAAG
GTCACGTGGCAACCAAGTGATGGTACGGTTTACATCTGGTTCTATCTAGCTCAAACAGATGGTTTATCCATACATAGTAG
AGGATTATCGGTTTTGTAGAAGTGTATTGGTAATTTACCAACATGTAGCAGGATGTATACACAGTATATTCAATGTCGGA
AATCATTCCCGTACAAAGTTACCTCGTACGGCAGGAAAAGTTANGAGGGGAAGCCCGATAAAATCCCATCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6086.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis