Browse Element(s) Details


Os.23313.4.S1_x_at

Description gb:NM_195850.1
DB_XREF= gi:37533059
TID=Os.23313.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0050M22.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0050M22.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1988011/11large secreted protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19850OsAffx.30454.1.S1_x_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19850OsAffx.30454.1.S1_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19860Os.22677.1.S1_a_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.22677.3.S1_x_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860OsAffx.13489.1.S1_at2/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.7672.1.S1_at1/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19880Os.23313.3.S1_at11/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19880Os.23313.4.S1_x_at11/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19880OsAffx.30595.1.S1_at1/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19890OsAffx.8261.1.S1_at11/1110+9603207..9606845retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23313.4.S1_x_at--199--1411Chr10:9592210..9592234 (25 bp)
AGACATGTATCTCACCTGTTTGGTC
LOC_Os10g19880
Os.23313.4.S1_x_at--181--5531Chr10:9592157..9592181 (25 bp)
GAAAACACCTGACCTTTGCAAAGCC
LOC_Os10g19880
Os.23313.4.S1_x_at--1106--2031Chr10:9590796..9590820 (25 bp)
ACTTCCTGGAAGATGGCCCTTTGGG
LOC_Os10g19880
Os.23313.4.S1_x_at--854--4171Chr10:9590742..9590795 (25 bp)
CCCATCTTCATAACACTGATCACTT
LOC_Os10g19880
Os.23313.4.S1_x_at--914--871Chr10:9590683..9590707 (25 bp)
AGGCCTATACTGCAATCTGTTCACA
LOC_Os10g19880
Os.23313.4.S1_x_at--390--2251Chr10:9590236..9590656 (25 bp)
AAATTTTGGATTCCCTGCTGCACTG
LOC_Os10g19880
Os.23313.4.S1_x_at--631--10471Chr10:9590160..9590184 (25 bp)
TTACCCCGTGATAAGTGGCCTCAAG
LOC_Os10g19880
Os.23313.4.S1_x_at--108--911Chr10:9590110..9590134 (25 bp)
AGGCGGTGTGACCATCAACATCAGG
LOC_Os10g19880
Os.23313.4.S1_x_at--912--5311Chr10:9590079..9590103 (25 bp)
GAAGGTAGCCTCCATGAAGCTCTGC
LOC_Os10g19880
Os.23313.4.S1_x_at--493--5051Chr10:9590045..9590069 (25 bp)
GCAGCAGCCAGAATTCACGTATCAA
LOC_Os10g19880
Os.23313.4.S1_x_at--996--9631Chr10:9589991..9590015 (25 bp)
TCAGTGTCTCGCCTTGTCAAGTTTA
LOC_Os10g19880
Target Sequence 
AGACATGTATCTCACCTGTTTGGTCTTTATCCAGGACATACTATGTCACTTGAGAAAACACCTGACCTTTGCAAAGCCGT
TGCAAATAGTCTCTATAAAAGAGGTGATGAAGGTCCTGGGTGGTCCACTTCCTGGAAGATGGCCCTTTGGGCCCATCTTC
ATAACACTGATCACTTTGGTAGATCCAAAACATGAGGTTGAAAAGGAAGGAGGCCTATACTGCAATCTGTTCACAGCACA
CCCACCTTTCCAAATTGATGCAAATTTTGGATTCCCTGCTGCACTGTCAGAAATGCTGGTACAGAGCACCGGGAGCGACT
TGTACTTGCTCCCTGCCTTACCCCGTGATAAGTGGCCTCAAGGTTGTGTGAAAGGTCTCAAGGCCCGAGGCGGTGTGACC
ATCAACATCAGGTGGGAGGAAGGTAGCCTCCATGAAGCTCTGCTTTGGTCCAGCAGCAGCCAGAATTCACGTATCAAGCT
GCACTATGGAGATCAGGTTGGGACGATCAGTGTCTCGCCTTGTCAAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23313.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis