Browse Element(s) Details


OsAffx.18303.1.S1_at

Description tigr:9638.m01625
TID=OsAffx.18303.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1982010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19330NANA10+9528379..9528894hypothetical protein
LOC_Os10g19334Os.12308.1.S1_at11/1110+9529766..9536654large secreted protein, putative, expressed
LOC_Os10g19338NANA10+9538524..9542812retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19342NANA10+9547055..9549128IQ calmodulin-binding motif family protein
LOC_Os10g19810OsAffx.20497.1.S1_at11/1110+9550634..9551206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19820OsAffx.18303.1.S1_at10/1110+9552396..9554233hypothetical protein
LOC_Os10g19830NANA10+9555484..9558788transposon protein, putative, Mariner sub-class, expressed
LOC_Os10g19850OsAffx.30454.1.S1_x_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19850OsAffx.30454.1.S1_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19860Os.22677.1.S1_a_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.22677.3.S1_x_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860OsAffx.13489.1.S1_at2/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.7672.1.S1_at1/1110+9575925..9586322myosin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18303.1.S1_at--189--3373Chr10:9552427..9552451 (25 bp)
CACCGTGGCACACGCGAACTAACGT
LOC_Os10g19820
OsAffx.18303.1.S1_at--49--5471NONE
GAACTAACGTGGAGATCGCCGGGCT
NONE
OsAffx.18303.1.S1_at--771--10631Chr10:9553440..9553464 (25 bp)
TTCGCCGGAAGAAGCCCGTCAAGCC
LOC_Os10g19820
OsAffx.18303.1.S1_at--646--2671Chr10:9553466..9553490 (25 bp)
AAGCCCAAGGATTGCGGCCGCTTCG
LOC_Os10g19820
OsAffx.18303.1.S1_at--855--3911Chr10:9553480..9553504 (25 bp)
CGGCCGCTTCGTCAGGTTCTACCAG
LOC_Os10g19820
OsAffx.18303.1.S1_at--1036--9971Chr10:9553499..9553523 (25 bp)
TACCAGTCCCTGGAGACTGGACGAG
LOC_Os10g19820
OsAffx.18303.1.S1_at--932--8231Chr10:9553899..9554132 (25 bp)
GGCAACAACGAAGAGCTGTCCTATA
LOC_Os10g19820
OsAffx.18303.1.S1_at--600--1371Chr10:9554121..9554143 (23 bp)
AGAGCTGTCCTATATGTATATCCGC
LOC_Os10g19820
OsAffx.18303.1.S1_at--245--751Chr10:9554132..9554156 (25 bp)
ATGTATATCCGCTTTCATATGCATA
LOC_Os10g19820
OsAffx.18303.1.S1_at--650--551Chr10:9554138..9554162 (25 bp)
ATCCGCTTTCATATGCATACTGCCA
LOC_Os10g19820
OsAffx.18303.1.S1_at--516--3571Chr10:9554147..9554171 (25 bp)
CATATGCATACTGCCATCAGAGATG
LOC_Os10g19820
Target Sequence 
CACCGTGGCACACGCGAACTAACGTGGAGATCGCCGGGCTTCGCCGGAAGAAGCCCGTCAAGCCCAAGCCCAAGGATTGC
GGCCGCTTCGTCAGGTTCTACCAGTCCCTGGAGACTGGACGAGAGGAGAACAGCAGTGGTGAAGCAACAACCTCGAGAAA
TTCAGAAATCAACCAACACATTGAGTATGACTTGGTGTTCGCTAGGCAGCTGCAAGCAATGGATAATCTGACAATTGAGA
CACCTGCAGATGAAGATGATGATATAAGCTGCGTACCCTCTCCATCTGACTCTGAAACTGATGAACCAGCAGAAGGCAAC
AACGAAGAGCTGTCCTATATGTATATCCGCTTTCATATGCATACTGCCATCAGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis