Browse Element(s) Details


Os.49203.1.S1_at

Description gb:AK063295.1
DB_XREF= gi:32973313
TID=Os.49203.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E09, full insert sequence.
FL= gb:AK063295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2133011/11formamidopyrimidine-DNA glycosylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21250OsAffx.5885.1.S1_at11/118+12682219..12682986retrotransposon, putative, centromere-specific
LOC_Os08g21260NANA8+12690205..12690609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280Os.52609.1.S1_at2/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280OsAffx.22947.2.S1_x_at1/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_x_at2/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_at1/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.33601.3.S1_x_at3/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.49936.2.A1_at1/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21320OsAffx.5886.1.S1_at11/118+12704826..12705059hypothetical protein
LOC_Os08g21330Os.49203.1.S1_at11/118+12705751..12714144formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os08g21350Os.5878.1.S1_at10/118+12719182..12727478cig3, putative, expressed
LOC_Os08g21350OsAffx.25413.1.S1_at1/118+12719182..12727478cig3, putative, expressed
LOC_Os08g21360Os.45173.1.S1_x_at3/118+12731477..12739402retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0019104molecular_functionDNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49203.1.S1_at--594--7051Chr08:12713577..12713601 (25 bp)
GTAACAGCTACCATTGTATCCGATT
LOC_Os08g21330
Os.49203.1.S1_at--844--4031Chr08:12713597..12713621 (25 bp)
CGATTACACGGTTAGTTTGGTTGCA
LOC_Os08g21330
Os.49203.1.S1_at--656--7911Chr08:12713615..12713639 (25 bp)
GGTTGCAGACGGTAACATCATTTGT
LOC_Os08g21330
Os.49203.1.S1_at--1124--3571Chr08:12713633..12713657 (25 bp)
CATTTGTTTACATTACGGCGTTTGG
LOC_Os08g21330
Os.49203.1.S1_at--768--5451Chr08:12713676..12713700 (25 bp)
GAACGGGAGGCCGATCCACAGGACA
LOC_Os08g21330
Os.49203.1.S1_at--835--6351Chr08:12713688..12713712 (25 bp)
GATCCACAGGACACGATTCGAAATT
LOC_Os08g21330
Os.49203.1.S1_at--1110--8054Chr08:12713746..12713770 (25 bp)
GGAGAACTGCTTGCTTCCAGACAAC
LOC_Os08g21330
Os.49203.1.S1_at--805--10631Chr08:12713846..12713870 (25 bp)
TTCGCGGAAGATACACTCCAGTACT
LOC_Os08g21330
Os.49203.1.S1_at--22--9671Chr08:12713977..12714001 (25 bp)
TCAGCCTAGCATCATATCCTGGAAG
LOC_Os08g21330
Os.49203.1.S1_at--248--254Chr11:5062789..5062811 (23 bp)
ATATCCTGGAAGATCTCTGAACAAG
NONE
Os.49203.1.S1_at--96--5051Chr08:12714069..12714093 (25 bp)
GCAGAGAATTGGACGCATCATTATA
LOC_Os08g21330
Target Sequence 
GTAACAGCTACCATTGTATCCGATTACACGGTTAGTTTGGTTGCAGACGGTAACATCATTTGTTTACATTACGGCGTTTG
GTTGAGGGTTGCAGCCAAGGAACGGGAGGCCGATCCACAGGACACGATTCGAAATTTGGAACAGAAACTTTTGGGAAGAT
CATTTGCTTGGAGAACTGCTTGCTTCCAGACAACTATTGATCAAATAACTGATTAAATGAAGCTGGTATACAAGTATGCA
ATTAAGCGCATGGCATATGCTATGAAACATTCGCGGAAGATACACTCCAGTACTATATCAATAGCAGCTGACATCAAAAG
CTACATAAAGAAGCTCAACAAATTTCGGCATGCAAATATTTGAAAGCAGCTAGTTNAGAAGTCATGAAATTGTATCTAAT
ATCAGCCTAGCATCATATCCTGGAAGATCTCTGAACAAGATCTTGNTAGATCTACTTCAGNCTCGAGTAAATATTGGACA
CCATGCATCACAAAGCAGAGAATTGGACGCATCATTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis