Browse Element(s) Details


Os.54285.1.S1_at

Description gb:AK103061.1
DB_XREF= gi:32988270
TID=Os.54285.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117L21, full insert sequence.
FL= gb:AK103061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4314011/11expressed protein
LOC_Os12g411701/11Root hair defective 3 GTP-binding protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43100NANA11+25501942..25503291retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43110Os.10827.1.S1_x_at7/1111+25508390..25509970transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43110Os.46055.2.S1_x_at2/1111+25508390..25509970transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43120NANA11+25510678..25511928transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43130Os.40855.2.S1_x_at10/1111+25515393..25517132hypothetical protein
LOC_Os11g43130Os.40855.4.S1_x_at3/1111+25515393..25517132hypothetical protein
LOC_Os11g43130Os.40360.1.S1_x_at1/1111+25515393..25517132hypothetical protein
LOC_Os11g43140Os.54285.1.S1_at11/1111+25521062..25525700expressed protein
LOC_Os11g43150OsAffx.32056.1.S1_x_at4/1111+25533003..25535616transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43150OsAffx.32056.1.S1_at3/1111+25533003..25535616transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43160OsAffx.10637.2.S1_at1/1111+25537730..25538506transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43170OsAffx.10637.3.S1_s_at3/1111+25539339..25540915hypothetical protein
LOC_Os11g43170OsAffx.10637.1.S1_s_at2/1111+25539339..25540915hypothetical protein
LOC_Os11g43170OsAffx.10637.4.S1_s_at2/1111+25539339..25540915hypothetical protein
LOC_Os11g43180OsAffx.19347.1.S1_s_at11/1111+25542735..25544010expressed protein
LOC_Os11g43180OsAffx.19347.1.S1_at11/1111+25542735..25544010expressed protein
LOC_Os11g43190OsAffx.19348.1.S1_at11/1111+25545445..25546802hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0006952biological_processdefense response
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009932biological_processcell tip growth
GO:0010053biological_processroot epidermal cell differentiation
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54285.1.S1_at--509--7791Chr11:25521604..25521628 (25 bp)
GGTCCTTCACTACCAAGATGTTGTC
LOC_Os11g43140
Os.54285.1.S1_at--307--5871Chr11:25521539..25521563 (25 bp)
GAGCTCAACGGTAAAATTATCCCTG
LOC_Os11g43140
Os.54285.1.S1_at--570--9051Chr11:25521411..25521435 (25 bp)
TGCATCCTTCATTCGTCCATGTAAA
LOC_Os11g43140
Os.54285.1.S1_at--181--7331Chr11:25521378..25521402 (25 bp)
GTGCTAGCTGCATGCTTTGTTACAA
LOC_Os11g43140
Os.54285.1.S1_at--394--3093Chr12:23956663..23956868 (25 bp)
AATAAACTTGTGTCGATCTGCTTTG
NONE
Os.54285.1.S1_at--498--6411Chr11:25521340..25521364 (25 bp)
GATCTGCTTTGTGTTTCTGTTTCTA
LOC_Os11g43140
Os.54285.1.S1_at--425--9314Chr12:477148..477172 (25 bp)
TCCCCTGTTTTTCTGTTGATTCTGT
NONE
Os.54285.1.S1_at--1006--6574Chr12:482012..482036 (25 bp)
GATTCTGTTAGAGTCACGCACATGA
NONE
Os.54285.1.S1_at--683--2091Chr11:25521267..25521291 (25 bp)
ACATGACCTCGCTGTGTTTTCGGTC
LOC_Os11g43140
Os.54285.1.S1_at--701--8891Chr11:25521148..25521172 (25 bp)
TGAGGGATCGTGTCCGCGTCAACTG
LOC_Os11g43140
Os.54285.1.S1_at--400--6993Chr12:477332..477353 (22 bp)
GTACGTGCCCATGATCTTGTATTCA
NONE
Target Sequence 
GGTCCTTCACTACCAAGATGTTGTCCCTCTCTGGCATCTGCTACCTTCCGCAACTGAAGGAGCTCGAGCTCAACGGTAAA
ATTATCCCTGATCAGGTGATACAAGACATTAAGGAACATAAAAACAAACCTATTTTTAATCACCAGTAAGATCGAAAAGG
AGCAGAAGAAGAGAAACAACAGATGCAAACGTATGCATCCTTCATTCGTCCATGTAAAGTTGGTATGTGCTAGCTGCATG
CTTTGTTACAAATAAACTTGTGTCGATCTGCTTTGTGTTTCTGTTTCTAGTAGTTTTTCCCTCCCCTGTTTTTCTGTTGA
TTCTGTTAGAGTCACGCACATGACCTCGCTGTGTTTTCGGTCGTGTGCGACGTTGGGGCTTGTCGTGTGCGTTTAGTTCG
CACGGGGGCTCGTCATGCGCGGGCACGATCTTGGTGATTGGGATGGCAGTCGCCGTTGAGGGATCGTGTCCGCGTCAACT
GGGCCAACGTACGTGCCCATGATCTTGTATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis