Browse Element(s) Details


OsAffx.19347.1.S1_s_at

Description tigr:9639.m03987
TID=OsAffx.19347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4318011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43140Os.54285.1.S1_at11/1111+25521062..25525700expressed protein
LOC_Os11g43150OsAffx.32056.1.S1_x_at4/1111+25533003..25535616transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43150OsAffx.32056.1.S1_at3/1111+25533003..25535616transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43160OsAffx.10637.2.S1_at1/1111+25537730..25538506transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43170OsAffx.10637.3.S1_s_at3/1111+25539339..25540915hypothetical protein
LOC_Os11g43170OsAffx.10637.1.S1_s_at2/1111+25539339..25540915hypothetical protein
LOC_Os11g43170OsAffx.10637.4.S1_s_at2/1111+25539339..25540915hypothetical protein
LOC_Os11g43180OsAffx.19347.1.S1_s_at11/1111+25542735..25544010expressed protein
LOC_Os11g43180OsAffx.19347.1.S1_at11/1111+25542735..25544010expressed protein
LOC_Os11g43190OsAffx.19348.1.S1_at11/1111+25545445..25546802hypothetical protein
LOC_Os11g43200OsAffx.19350.1.S1_x_at10/1111+25550729..25552303Tropinone reductase homolog At1g07440, putative
LOC_Os11g43200OsAffx.19350.1.S1_at10/1111+25550729..25552303Tropinone reductase homolog At1g07440, putative
LOC_Os11g43210OsAffx.18864.1.S1_at2/1111+25557814..25559751transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43210OsAffx.8152.1.S1_at1/1111+25557814..25559751transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43220OsAffx.31454.1.S1_at11/1111+25567354..25567970hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19347.1.S1_s_at--385--6551Chr11:25543298..25543322 (25 bp)
GATTAGTCGGATCCAAGATTTGGGT
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--953--2311Chr11:25543199..25543223 (25 bp)
AAAGTTGACGAACTCAAGCTGGGAG
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--901--2231Chr11:25543169..25543193 (25 bp)
AAATTACGTCATGTACCTCGTCGTC
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--84--9971Chr11:25543156..25543180 (25 bp)
TACCTCGTCGTCAAGTGCAAAGCCA
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--1070--3071Chr11:25543122..25543146 (25 bp)
AATACGAGCGTGACAGTCTCAGTTA
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--203--7551Chr11:25543079..25543103 (25 bp)
GTGGCCTGTTATCTTAGACCGCCCA
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--1035--10011Chr11:25543065..25543089 (25 bp)
TAGACCGCCCAGTTGATCGGAGTGA
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--1051--6071Chr11:25543042..25543066 (25 bp)
GAGTTTGTCGAGAATCTCCTTTCCG
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--319--9271Chr11:25543021..25543045 (25 bp)
TCCGCACGGCATCATGATGTGCTTG
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--384--9091Chr11:25542947..25542971 (25 bp)
TGCTCGCTGGGACCTTATCTCGACG
LOC_Os11g43180
OsAffx.19347.1.S1_s_at--504--4791Chr11:25542821..25542845 (25 bp)
GCTCCTTATGATCCTAAGATTTCCT
LOC_Os11g43180
Target Sequence 
GATTAGTCGGATCCAAGATTTGGGTTTTGTGGCAAGTGTCTTTATTTGGCACCTGGTGACCGACATATGCCTAGAGGCCG
ACAGTACTAGAGTTGCTGAAAAGTTGACGAACTCAAGCTGGGAGTTGTCAAATTACGTCATGTACCTCGTCGTCAAGTGC
AAAGCCATGGTCAGTAAATACGAGCGTGACAGTCTCAGTTATAGTCGAGAGCAAGTGATGTGGCCTGTTATCTTAGACCG
CCCAGTTGATCGGAGTGAGTTTGTCGAGAATCTCCTTTCCGCACGGCATCATGATGTGCTTGGTGATGCTATCGATGTGT
CGTCAGAATTGCTTAAAATGGAGGAAGCAGCTGCTCGCTGGGACCTTATCTCGACGGTATGGGTGGAGATGATTTGTTAC
ATGGCGCACAACTGTGGTGTTGCTTTTCACGCGAAGCAGCTATGCGCTGGTGGGGAGTTGGTCACCCATGTCAAGATGCT
CCTTATGATCCTAAGATTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19347.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis