Browse Element(s) Details


OsAffx.19350.1.S1_at

Description tigr:9639.m04005
TID=OsAffx.19350.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4336011/11Tropinone reductase homolog At1g07440, putative
LOC_Os11g4320010/11Tropinone reductase homolog At1g07440, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43330OsAffx.4416.1.S1_at2/1111+25642148..25644966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43330Os.46986.1.S1_at1/1111+25642148..25644966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43340OsAffx.7395.1.S1_at11/1111+25652904..25654516hypothetical protein
LOC_Os11g43350OsAffx.25962.1.S1_at11/1111+25655683..25661428transposon protein, putative, Mutator sub-class
LOC_Os11g43360OsAffx.19350.1.S1_x_at11/1111+25662189..25663480Tropinone reductase homolog At1g07440, putative
LOC_Os11g43360OsAffx.19350.1.S1_at11/1111+25662189..25663480Tropinone reductase homolog At1g07440, putative
LOC_Os11g43370NANA11+25674646..25680747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43380OsAffx.21897.5.S1_x_at4/1111+25681064..25684004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43390Os.49941.1.S1_at11/1111+25688350..25691231expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19350.1.S1_at--1149--1212Chr11:25663106..25663130 (25 bp)
AGTTCGGCGGCAGGCTGGACATCCT
LOC_Os11g43360
OsAffx.19350.1.S1_at--33--7192Chr11:25663071..25663095 (25 bp)
GTCGGCCGGACCATGTTCCGGGCGG
LOC_Os11g43360
OsAffx.19350.1.S1_at--243--8472Chr11:25662869..25662893 (25 bp)
TGGCCGTGTACTCCATGACCAAGGG
LOC_Os11g43360
OsAffx.19350.1.S1_at--91--4492Chr11:25662867..25662891 (25 bp)
GCCGTGTACTCCATGACCAAGGGCG
LOC_Os11g43360
OsAffx.19350.1.S1_at--468--7232Chr11:25662777..25662801 (25 bp)
GTCGCGCCGGGAGGCGTCAAGACTG
LOC_Os11g43360
OsAffx.19350.1.S1_at--1131--451Chr11:25662344..25662774 (25 bp)
ATCTGCCAAGACGAGACGATAGACC
LOC_Os11g43360
OsAffx.19350.1.S1_at--165--2732Chr11:25662337..25662767 (25 bp)
AAGACGAGACGATAGACCCGGAGCT
LOC_Os11g43360
OsAffx.19350.1.S1_at--623--4072Chr11:25662333..25662356 (24 bp)
CGAGACGATAGACCCGGAGCTGATC
LOC_Os11g43360
OsAffx.19350.1.S1_at--556--1612Chr11:25662316..25662340 (25 bp)
AGCTGATCAAGAGCGAGATGGACCG
LOC_Os11g43360
OsAffx.19350.1.S1_at--38--9732Chr11:25662310..25662334 (25 bp)
TCAAGAGCGAGATGGACCGGCTGCC
LOC_Os11g43360
OsAffx.19350.1.S1_at--283--5892Chr11:25662306..25662330 (25 bp)
GAGCGAGATGGACCGGCTGCCGATG
LOC_Os11g43360
Target Sequence 
AGTTCGGCGGCAGGCTGGACATCCTCGTCAACAACGTCGGCCGGACCATGTTCCGGGCGGCGGCGGCGTGCTCCGGCGAG
GACTTCGCCNTGCTCGTGGCCACCAACCTCGAGTCCTGCTTCCACCTCTCCCAGCTCGCGCACCCGCTCCTGCTCGCCGC
CGGCGGCGNNNNNNNNNNNNGAGGCGGCTGCGTGGTGAACATCTCCTCCGTCGCCGGCANCGTCGGCATNCCGGCGCTGG
CCGTGTACTCCATGACCAAGGGCGGCATGAACCAGCTCACNCGGAGCCTCGCCGCCGAGTGGGCCGGCGACGGCATNCGT
GTCAACTGCGTCGCGCCGGGAGGCGTCAAGACTGANATCTGCCAAGACGAGACGATAGACCCGGAGCTGATCAAGAGCGA
GATGGACCGGCTGCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis