Browse Element(s) Details


OsAffx.31454.1.S1_at

Description tigr:9639.m03991
TID=OsAffx.31454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4322011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43180OsAffx.19347.1.S1_s_at11/1111+25542735..25544010expressed protein
LOC_Os11g43180OsAffx.19347.1.S1_at11/1111+25542735..25544010expressed protein
LOC_Os11g43190OsAffx.19348.1.S1_at11/1111+25545445..25546802hypothetical protein
LOC_Os11g43200OsAffx.19350.1.S1_x_at10/1111+25550729..25552303Tropinone reductase homolog At1g07440, putative
LOC_Os11g43200OsAffx.19350.1.S1_at10/1111+25550729..25552303Tropinone reductase homolog At1g07440, putative
LOC_Os11g43210OsAffx.18864.1.S1_at2/1111+25557814..25559751transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43210OsAffx.8152.1.S1_at1/1111+25557814..25559751transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43220OsAffx.31454.1.S1_at11/1111+25567354..25567970hypothetical protein
LOC_Os11g43230NANA11+25571073..25574641retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g43240OsAffx.7394.1.S1_at11/1111+25575106..25575761hypothetical protein
LOC_Os11g43250Os.49931.1.S1_at11/1111+25581291..25584503Leucine Rich Repeat family protein, expressed
LOC_Os11g43260OsAffx.12277.1.S1_at1/1111+25591655..25597304transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31454.1.S1_at--993--1511Chr11:25567397..25567421 (25 bp)
AGCAGTGGATGGAAGGCCTGGACTG
LOC_Os11g43220
OsAffx.31454.1.S1_at--603--7991Chr11:25567403..25567427 (25 bp)
GGATGGAAGGCCTGGACTGGAGCAT
LOC_Os11g43220
OsAffx.31454.1.S1_at--615--8351Chr11:25567428..25567452 (25 bp)
GGCGGCCATGGTGACTGTCAGTTCT
LOC_Os11g43220
OsAffx.31454.1.S1_at--557--4711Chr11:25567429..25567452 (24 bp)
GCGGCCATGGTGACTGTCAGTTCTA
LOC_Os11g43220
OsAffx.31454.1.S1_at--164--3931Chr11:25567430..25567452 (23 bp)
CGGCCATGGTGACTGTCAGTTCTAC
LOC_Os11g43220
OsAffx.31454.1.S1_at--729--8431Chr11:25567431..25567452 (22 bp)
GGCCATGGTGACTGTCAGTTCTACA
LOC_Os11g43220
OsAffx.31454.1.S1_at--163--4431Chr11:25567432..25567452 (21 bp)
GCCATGGTGACTGTCAGTTCTACAA
LOC_Os11g43220
OsAffx.31454.1.S1_at--753--4331Chr11:25567433..25567611 (25 bp)
CCATGGTGACTGTCAGTTCTACAAG
LOC_Os11g43220
OsAffx.31454.1.S1_at--268--3511Chr11:25567434..25567612 (25 bp)
CATGGTGACTGTCAGTTCTACAAGA
LOC_Os11g43220
OsAffx.31454.1.S1_at--900--8612Chr11:25668810..25669028 (25 bp)
TGGTGACTGTCAGTTCTACAAGAAC
NONE
OsAffx.31454.1.S1_at--500--3732Chr11:25567645..25567667 (23 bp)
CTACAAGAACTGAACAGAACAAGAA
LOC_Os11g43220
Target Sequence 
AGCAGTGGATGGAAGGCCTGGACTGGAGCATGGCGGCCATGGTGACTGTCAGTTCTACAAGAACTGAACAGAACAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis