Browse Element(s) Details


Os.20476.1.A1_at

Description gb:AK065937.1
DB_XREF= gi:32975955
TID=Os.20476.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043E22, full insert sequence.
FL= gb:AK065937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g276607/11ANTH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27650Os.5733.1.A1_s_at11/119+16821231..16824664Zinc finger, C2H2 type family protein, expressed
LOC_Os09g27660Os.20476.2.S1_a_at11/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.57346.1.S1_at10/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.20476.1.A1_at7/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660OsAffx.1705.1.S1_at1/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27670OsAffx.17937.1.S1_at11/119+16845524..16846607hypothetical protein
LOC_Os09g27680Os.50860.1.S1_at2/119+16847165..16847464expressed protein
LOC_Os09g27690Os.8438.1.S1_at11/119+16851237..16853657expressed protein
LOC_Os09g27690OsAffx.30062.1.S1_at7/119+16851237..16853657expressed protein
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20476.1.A1_at--898--5491Chr09:16837007..16837031 (25 bp)
GAACAGTTTTTCGTCGGATTCCAGA
LOC_Os09g27660
Os.20476.1.A1_at--198--6491Chr09:16837039..16837063 (25 bp)
GATACTGGAGGTCTACAATTGCTTA
LOC_Os09g27660
Os.20476.1.A1_at--609--10031Chr09:16837103..16837127 (25 bp)
TAGAGGGTGTGAGCTTCCATGTTAA
LOC_Os09g27660
Os.20476.1.A1_at--150--5491Chr09:16837165..16837189 (25 bp)
GAACTTATGCAGCTGTTGCTGTCAT
LOC_Os09g27660
Os.20476.1.A1_at--417--6371Chr09:16837195..16837219 (25 bp)
GATCCTTAACACTTTTAGCTTCCAG
LOC_Os09g27660
Os.20476.1.A1_at--691--7971Chr09:16837248..16837272 (25 bp)
GGATGAGGGCTTCATAACCTGTATG
LOC_Os09g27660
Os.20476.1.A1_at--862--7934Chr09:16837281..16837305 (25 bp)
GGATTTCCACTAAGATGCATGCCTA
LOC_Os09g27660
Os.20476.1.A1_at--179--7071Chr09:16837450..16837474 (25 bp)
GTAAGTGCAATCAGCTACTGTGCCT
NONE
Os.20476.1.A1_at--346--7271Chr09:16837469..16837493 (25 bp)
GTGCCTTTTGTCACAGGACCTTCTA
NONE
Os.20476.1.A1_at--166--8092Chr10:18777486..18777510 (25 bp)
GGACCTTCTAGGTGCACACAATTAG
NONE
Os.20476.1.A1_at--979--1171Chr09:16837507..16837531 (25 bp)
AGTACCAGTGTGCTCATGCTGCAGA
NONE
Target Sequence 
GAACAGTTTTTCGTCGGATTCCAGATTTTATGGATACTGGAGGTCTACAATTGCTTATTAATTAGCTCGATAGAATCAAC
CACTACAATCTGCACATAGAGGGTGTGAGCTTCCATGTTAAGTGCTTTACATAGGCTGATTTAAAAACACTTGTAATGGA
ACTTATGCAGCTGTTGCTGTCATTAGATGATCCTTAACACTTTTAGCTTCCAGAATGAAAAGGATTAAGTATTTAAACTA
TGGATGAGGGCTTCATAACCTGTATGACAACAGTGGATTTCCACTAAGATGCATGCCTACATTCAAAATCTGAGTTAGAA
AAGAAAATTTAGCAATTTGATACATAATACATACCCTTGGATTAGGATATTCTTATGAGTACTTTACCATATTCACTAAA
CTCCAGGAACACTTCATATTTAAGAAAATGCAGTATGAGATATGTAAGTGCAATCAGCTACTGTGCCTTTTGTCACAGGA
CCTTCTAGGTGCACACAATTAGTACCAGTGTGCTCATGCTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20476.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis