Browse Element(s) Details


OsAffx.22719.1.S1_at

Description gb:NM_184712.1
DB_XREF= gi:34896513
GEN=OSJNBa0053G10.7
TID=OsAffx.22719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0053G10.7), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3558011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35560Os.41248.4.S1_x_at1/113+19663048..19668365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g35570OsAffx.25365.1.S1_at11/113+19674199..19676710Transposable element protein, putative, Transposase_28
LOC_Os03g35580OsAffx.22719.1.S1_at11/113+19678395..19680259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35600Os.24924.1.S1_at11/113+19681517..19685875D-mannose binding lectin family protein, expressed
LOC_Os03g35610NANA3+19687797..19688889retrotransposon protein, putative, unclassified
LOC_Os03g35620OsAffx.25366.1.S1_at11/113+19690376..19692318hypothetical protein
LOC_Os03g35630OsAffx.1646.1.S1_x_at11/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.20851.1.A1_x_at2/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.55580.1.S1_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630OsAffx.22442.1.S1_x_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35640Os.45161.1.A1_x_at11/113+19695064..19698279hypothetical protein
LOC_Os03g35650OsAffx.25367.1.S1_at9/113+19700648..19703132retrotransposon, putative, centromere-specific
LOC_Os03g35650Os.31845.2.S1_x_at1/113+19700648..19703132retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22719.1.S1_at--52--2951Chr03:19678937..19678961 (25 bp)
AAGGCGAAGCTAATTCACCTCGTGC
LOC_Os03g35580
OsAffx.22719.1.S1_at--369--131Chr03:19678925..19678949 (25 bp)
ATTCACCTCGTGCTCGATGGCATAG
LOC_Os03g35580
OsAffx.22719.1.S1_at--916--4051Chr03:19678911..19678935 (25 bp)
CGATGGCATAGCCAGATCTTGGTAT
LOC_Os03g35580
OsAffx.22719.1.S1_at--941--91Chr03:19678739..19678763 (25 bp)
ATTCGCCGGTTTTTGCAAGCACGAT
LOC_Os03g35580
OsAffx.22719.1.S1_at--1071--5531Chr03:19678638..19678662 (25 bp)
GAAACTTGTGCGCAAGGAGCCCAGA
LOC_Os03g35580
OsAffx.22719.1.S1_at--552--4591Chr03:19678629..19678653 (25 bp)
GCGCAAGGAGCCCAGAACACTTGAA
LOC_Os03g35580
OsAffx.22719.1.S1_at--337--631Chr03:19678579..19678603 (25 bp)
ATGCTCGAGATGAGGAAGACACCAA
LOC_Os03g35580
OsAffx.22719.1.S1_at--400--10131Chr03:19678529..19678553 (25 bp)
TATGACAAAGCAGCCGCGGCCGCAG
LOC_Os03g35580
OsAffx.22719.1.S1_at--199--2011Chr03:19678466..19678490 (25 bp)
ACTCAAGCTATAAGTTCGGTACCAA
LOC_Os03g35580
OsAffx.22719.1.S1_at--1000--3131Chr03:19678443..19678467 (25 bp)
AATTCAGGTTCAACCGGCACCCTTG
LOC_Os03g35580
OsAffx.22719.1.S1_at--622--8231Chr03:19678428..19678452 (25 bp)
GGCACCCTTGGCAAACCAAGTACCG
LOC_Os03g35580
Target Sequence 
AAGGCGAAGCTAATTCACCTCGTGCTCGATGGCATAGCCAGATCTTGGTATTTCAATTTGCCTGTTAATAGCATTTACTC
ATGGGAGCAATTGCGCGATGTTTTTGTTCTTAACTTTCGAGGTACCTATGAGGAGCCGAAAACTCAACAAGACCTTGTGG
GCATTCACCAAAGGCAAGGGGAATCGACAAGGGAGTACATTCGCCGGTTTTTGCAAGCACGATGCCAAGTGCAAGATATA
ACCGAAGCGTCTGTGATCCATGCTGCTTCGGCCGGTTTGCTCGAGGGCGAACTCACAAGGAAACTTGTGCGCAAGGAGCC
CAGAACACTTGAACACCTCTTTCGCATAATTGATGGATATGCTCGAGATGAGGAAGACACCAAGCGAAGGAGAGAAATAC
AAGCCGAATATGACAAAGCAGCCGCGGCCGCAGCAGCCGCCGTCCAAACCAATACCCAAGCTCAGGTCCAAACTCAAGCT
ATAAGTTCGGTACCAATTCAGGTTCAACCGGCACCCTTGGCAAACCAAGTACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis