Browse Element(s) Details


OsAffx.25365.1.S1_at

Description tigr:9631.m03399
TID=OsAffx.25365.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3557011/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35540OsAffx.10490.1.S1_at10/113+19645624..19652237retrotransposon protein, putative, unclassified
LOC_Os03g35560Os.41248.4.S1_x_at1/113+19663048..19668365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g35570OsAffx.25365.1.S1_at11/113+19674199..19676710Transposable element protein, putative, Transposase_28
LOC_Os03g35580OsAffx.22719.1.S1_at11/113+19678395..19680259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35600Os.24924.1.S1_at11/113+19681517..19685875D-mannose binding lectin family protein, expressed
LOC_Os03g35610NANA3+19687797..19688889retrotransposon protein, putative, unclassified
LOC_Os03g35620OsAffx.25366.1.S1_at11/113+19690376..19692318hypothetical protein
LOC_Os03g35630OsAffx.1646.1.S1_x_at11/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.20851.1.A1_x_at2/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.55580.1.S1_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630OsAffx.22442.1.S1_x_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35640Os.45161.1.A1_x_at11/113+19695064..19698279hypothetical protein
LOC_Os03g35650OsAffx.25367.1.S1_at9/113+19700648..19703132retrotransposon, putative, centromere-specific
LOC_Os03g35650Os.31845.2.S1_x_at1/113+19700648..19703132retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25365.1.S1_at--440--4151Chr03:19676183..19676207 (25 bp)
CGCGTTGTGGCGGATACCCTAAGAA
LOC_Os03g35570
OsAffx.25365.1.S1_at--643--151Chr03:19676246..19676270 (25 bp)
ATATCTCTTCGCTCCGACCTAGAGG
LOC_Os03g35570
OsAffx.25365.1.S1_at--96--5811Chr03:19676285..19676309 (25 bp)
GACGCCGAAAGGGATCGCCAGCTTG
LOC_Os03g35570
OsAffx.25365.1.S1_at--1004--1251Chr03:19676325..19676349 (25 bp)
AGATTAGGTGTCTTGAGGCCCGTCT
LOC_Os03g35570
OsAffx.25365.1.S1_at--368--5411Chr03:19676360..19676384 (25 bp)
GAAGCTGCTACTGCGACTTTGGTGC
LOC_Os03g35570
OsAffx.25365.1.S1_at--714--5651Chr03:19676389..19676413 (25 bp)
GACAGAGTCCGCCAAGCAAGCCTAT
LOC_Os03g35570
OsAffx.25365.1.S1_at--511--2651Chr03:19676406..19676430 (25 bp)
AAGCCTATTACACCCTCAAGCTAGC
LOC_Os03g35570
OsAffx.25365.1.S1_at--1093--9711Chr03:19676421..19676445 (25 bp)
TCAAGCTAGCTCTCAACGACCTGGG
LOC_Os03g35570
OsAffx.25365.1.S1_at--368--3971Chr03:19676523..19676547 (25 bp)
CGGTTGTCGATGTGGCTTGTGCTTA
LOC_Os03g35570
OsAffx.25365.1.S1_at--637--1831Chr03:19676598..19676622 (25 bp)
ACGCGCATAGTTGCGACCATGTTGA
LOC_Os03g35570
OsAffx.25365.1.S1_at--634--10871Chr03:19676650..19676674 (25 bp)
TTGGCCCGAGAAGTCGGAGTGCTCC
LOC_Os03g35570
Target Sequence 
CGCGTTGTGGCGGATACCCTAAGAAAGGTGAATGCGGAGAACAAGGCTCTCACCGGAGAAAACATATCTCTTCGCTCCGA
CCTAGAGGCGGCGAACAAGCGGGACGCCGAAAGGGATCGCCAGCTTGCCGCGGCCGAGGAGAAGATTAGGTGTCTTGAGG
CCCGTCTTGTTTCGGCCGAAGCTGCTACTGCGACTTTGGTGCCGGCGACAGAGTCCGCCAAGCAAGCCTATTACACCCTC
AAGCTAGCTCTCAACGACCTGGGCGCTCGTGCGGAGGGCGCTCCAAGTGACGATGGGACGACATTCGACTTCTCCGAGTG
GACGCAGGAAGCGGCCGACTCGGTTGTCGATGTGGCTTGTGCTTATGAAGACTGTTGTGCGCGTGTTTCGGCGGGCTTCG
TACTTAGCCTGCTCCACGCGCATAGTTGCGACCATGTTGAGGATTTTCCCGATTGGGTGAAGGAGGATTGGCCCGAGAAG
TCGGAGTGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis