Browse Element(s) Details


Os.24924.1.S1_at

Description gb:AK066162.1
DB_XREF= gi:32976180
TID=Os.24924.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like kinase (OSJNBa0053G10.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013053H05, full insert sequence.
FL= gb:AK066162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3560011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35560Os.41248.4.S1_x_at1/113+19663048..19668365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g35570OsAffx.25365.1.S1_at11/113+19674199..19676710Transposable element protein, putative, Transposase_28
LOC_Os03g35580OsAffx.22719.1.S1_at11/113+19678395..19680259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35600Os.24924.1.S1_at11/113+19681517..19685875D-mannose binding lectin family protein, expressed
LOC_Os03g35610NANA3+19687797..19688889retrotransposon protein, putative, unclassified
LOC_Os03g35620OsAffx.25366.1.S1_at11/113+19690376..19692318hypothetical protein
LOC_Os03g35630OsAffx.1646.1.S1_x_at11/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.20851.1.A1_x_at2/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.55580.1.S1_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630OsAffx.22442.1.S1_x_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35640Os.45161.1.A1_x_at11/113+19695064..19698279hypothetical protein
LOC_Os03g35650OsAffx.25367.1.S1_at9/113+19700648..19703132retrotransposon, putative, centromere-specific
LOC_Os03g35650Os.31845.2.S1_x_at1/113+19700648..19703132retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24924.1.S1_at--99--4651Chr03:19685052..19685076 (25 bp)
GCGTCCTGGTACTGGAGATTGTCAG
LOC_Os03g35600
Os.24924.1.S1_at--682--7931Chr03:19685093..19685117 (25 bp)
GGATTCTACCACAATGAGCTCGACC
LOC_Os03g35600
Os.24924.1.S1_at--5--4291Chr03:19685116..19685382 (25 bp)
CCTGAACCTCCTTAGATATGCTTGG
LOC_Os03g35600
Os.24924.1.S1_at--611--931Chr03:19685393..19685417 (25 bp)
AGGAAGGTCGGAGCTTAGAGTTCTT
LOC_Os03g35600
Os.24924.1.S1_at--509--3951Chr03:19685433..19685457 (25 bp)
CGGCACTTCCTCAAACGTGACGGAG
LOC_Os03g35600
Os.24924.1.S1_at--167--1051Chr03:19685464..19685488 (25 bp)
AGGTGCATCCAGATTGGCCTGCTGT
LOC_Os03g35600
Os.24924.1.S1_at--439--9131Chr03:19685564..19685588 (25 bp)
TGCTGGAGCCGTGCGAGCCTGCTTT
LOC_Os03g35600
Os.24924.1.S1_at--1082--10031Chr03:19685666..19685690 (25 bp)
TAGAGGGCAGATAGCTACAGCACGG
LOC_Os03g35600
Os.24924.1.S1_at--564--3411Chr03:19685683..19685707 (25 bp)
CAGCACGGGCTTATCGCAGGATGAA
LOC_Os03g35600
Os.24924.1.S1_at--246--10731Chr03:19685779..19685803 (25 bp)
TTGCTTTATTTATTGCCTGCGATGT
LOC_Os03g35600
Os.24924.1.S1_at--502--3571Chr03:19685806..19685830 (25 bp)
CATACTTTGATGCAGTTGCGTGTAA
LOC_Os03g35600
Target Sequence 
GCGTCCTGGTACTGGAGATTGTCAGTGGCAAGAAGAACAGAGGATTCTACCACAATGAGCTCGACCTGAACCTCCTTAGA
TATGCTTGGAGGCTGTGGAAGGAAGGTCGGAGCTTAGAGTTCTTGGATCAGTCTATNGCCGGCACTTCCTCAAACGTGAC
GGAGGTGCTGAGGTGCATCCAGATTGGCCTGCTGTGCGTCCAGGAGCAGCCGAGGCACAGGCCGACCATGTNGGCGGTGA
CCATGATGCTGAGCAGCGAGAGCCCCGCGCTGCTGGAGCCGTGCGAGCCTGCTTTCTGCACGGGGAGGAGCCTCAGCGAC
GACACGGAGGCCAGCCGGTCCAACAGCGCAAGAAGCTGGACTGTAACAGTTGTAGAGGGCAGATAGCTACAGCACGGGCT
TATCGCAGGATGAACACTGTACGTTTTGTATGTAATTTAAGCACAATGGGATTTGATTTAATTATACTCACTCGNCAAGA
TTGTTTTGCTTTATTTATTGCCTGCGATGTTGCATACTTTGATGCAGTTGCGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis