Browse Element(s) Details


OsAffx.24402.1.S1_at

Description tigr:9630.m02249
TID=OsAffx.24402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2420011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24150NANA2+13987867..13989456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24160NANA2+13992822..13993028NA
LOC_Os02g24170NANA2+13994428..13999534retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24190Os.17669.1.S1_a_at11/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.38764.1.S1_x_at6/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.48015.1.A1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.31813.1.S1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.20877.1.S1_at1/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24200OsAffx.24402.1.S1_at11/112+14012162..14012705hypothetical protein
LOC_Os02g24210Os.51348.1.S1_at11/112+14020003..14020667expressed protein
LOC_Os02g24210Os.51348.1.S1_x_at11/112+14020003..14020667expressed protein
LOC_Os02g24220NANA2+14030210..14031590transposon protein, putative, unclassified
LOC_Os02g24230OsAffx.1196.1.S1_at2/112+14036866..14041277Zinc knuckle family protein
LOC_Os02g24230OsAffx.1196.1.S1_x_at1/112+14036866..14041277Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24402.1.S1_at--37--2891Chr02:14012610..14012634 (25 bp)
AAGGGCATGCTTGGTAGCTCTGTTA
LOC_Os02g24200
OsAffx.24402.1.S1_at--578--7851Chr02:14012598..14012622 (25 bp)
GGTAGCTCTGTTAACCATCTCGGTC
LOC_Os02g24200
OsAffx.24402.1.S1_at--146--471Chr02:14012582..14012606 (25 bp)
ATCTCGGTCCAAGGTGTATCTGCTG
LOC_Os02g24200
OsAffx.24402.1.S1_at--980--51Chr02:14012552..14012576 (25 bp)
ATTGAGACTGACTCGGCCATACTGG
LOC_Os02g24200
OsAffx.24402.1.S1_at--828--8471Chr02:14012530..14012554 (25 bp)
TGGCTTTGGCGATTAAGTCCTCATC
LOC_Os02g24200
OsAffx.24402.1.S1_at--978--9611Chr02:14012510..14012534 (25 bp)
TCATCGCATGACCTAGCCACTGGTG
LOC_Os02g24200
OsAffx.24402.1.S1_at--461--4371Chr02:14012494..14012518 (25 bp)
CCACTGGTGCTACAATCTTCACGGA
LOC_Os02g24200
OsAffx.24402.1.S1_at--936--2411Chr02:14012465..14012489 (25 bp)
AAAACGCTTCTCCAGTTTCAGTTTG
LOC_Os02g24200
OsAffx.24402.1.S1_at--107--3451Chr02:14012447..14012471 (25 bp)
CAGTTTGCTAGCTTTGAGGTCTCTT
LOC_Os02g24200
OsAffx.24402.1.S1_at--79--10391Chr02:14012424..14012448 (25 bp)
TTTTGCGCCTCGTTCTTGTAATAAA
LOC_Os02g24200
OsAffx.24402.1.S1_at--328--4831Chr02:14012397..14012420 (24 bp)
GCTCACGAACTTGCTCATTTGGGTA
LOC_Os02g24200
Target Sequence 
AAGGGCATGCTTGGTAGCTCTGTTAACCATCTCGGTCCAAGGTGTATCTGCTGTGGAAATTGAGACTGACTCGGCCATAC
TGGCTTTGGCGATTAAGTCCTCATCGCATGACCTAGCCACTGGTGCTACAATCTTCACGGAAATAAAAACGCTTCTCCAG
TTTCAGTTTGCTAGCTTTGAGGTCTCTTTTGCGCCTCGTTCTTGTAATAAAGTTGCTCACGAACTTGCTCATTTGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis