Browse Element(s) Details


Os.37869.2.S1_a_at

Description gb:NM_187913.1
DB_XREF= gi:34902909
TID=Os.37869.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1527011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15200Os.43777.1.S1_at9/111+8517789..8518356hypothetical protein
LOC_Os01g15210NANA1+8519598..8520992hypothetical protein
LOC_Os01g15220OsAffx.22222.3.S1_x_at11/111+8521973..8522956expressed protein
LOC_Os01g15220OsAffx.22222.3.S1_at11/111+8521973..8522956expressed protein
LOC_Os01g15229OsAffx.22222.1.S1_x_at11/111+8524356..8525156hypothetical protein
LOC_Os01g15240NANA1+8529014..8529721hypothetical protein
LOC_Os01g15250OsAffx.23257.1.S1_at11/111+8532477..8533844expressed protein
LOC_Os01g15260OsAffx.27867.1.S1_s_at11/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15260Os.10666.1.S1_at9/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed
LOC_Os01g15290Os.51824.1.S1_at10/111+8552091..855394850S ribosomal protein L18, putative, expressed
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37869.2.S1_a_at--402--9291Chr01:8543115..8543139 (25 bp)
TCCGCGTGCACCTGAACGACGACGA
LOC_Os01g15270
Os.37869.2.S1_a_at--1128--1851Chr01:8543094..8543118 (25 bp)
ACGACGACGCATCATCGCCGGGCGG
LOC_Os01g15270
Os.37869.2.S1_a_at--301--551Chr01:8543044..8543068 (25 bp)
ATCCCTACCGTTTCCTTGCTGCGTG
LOC_Os01g15270
Os.37869.2.S1_a_at--1130--1771Chr01:8543038..8543062 (25 bp)
ACCGTTTCCTTGCTGCGTGTGGGCT
LOC_Os01g15270
Os.37869.2.S1_a_at--671--10291Chr01:8543034..8543058 (25 bp)
TTTCCTTGCTGCGTGTGGGCTGGAT
LOC_Os01g15270
Os.37869.2.S1_a_at--827--8551Chr01:8543014..8543038 (25 bp)
TGGATGCTCTGCTCGTGTGCTGGTT
LOC_Os01g15270
Os.37869.2.S1_a_at--193--6351Chr01:8543012..8543036 (25 bp)
GATGCTCTGCTCGTGTGCTGGTTCT
LOC_Os01g15270
Os.37869.2.S1_a_at--1062--9091Chr01:8543005..8543029 (25 bp)
TGCTCGTGTGCTGGTTCTTCGTGCA
LOC_Os01g15270
Os.37869.2.S1_a_at--881--7891Chr01:8542993..8543017 (25 bp)
GGTTCTTCGTGCACCTCTCATGTAA
LOC_Os01g15270
Os.37869.2.S1_a_at--938--10611Chr01:8542988..8543012 (25 bp)
TTCGTGCACCTCTCATGTAACAGCG
LOC_Os01g15270
Os.37869.2.S1_a_at--101--4011Chr01:8542986..8543010 (25 bp)
CGTGCACCTCTCATGTAACAGCGAG
LOC_Os01g15270
Target Sequence 
TCCGCGTGCACCTGAACGACGACGACGACGCATCATCGCCGGGCGGCGGATCGGCCGGCGGCGGCGGCGGCATCCCTACC
GTTTCCTTGCTGCGTGTGGGCTGGATGCTCTGCTCGTGTGCTGGTTCTTCGTGCACCTCTCATGTAACAGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37869.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis