Browse Element(s) Details


OsAffx.22222.3.S1_x_at

Description tigr:9629.m01506
TID=OsAffx.22222.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1522011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15170Os.33.1.S1_at11/111+8501837..8502487hypothetical protein
LOC_Os01g15180OsAffx.22722.1.S1_x_at1/111+8506180..8511940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15190OsAffx.20440.2.S1_x_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.2.S1_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.1.S1_x_at1/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15200Os.43777.1.S1_at9/111+8517789..8518356hypothetical protein
LOC_Os01g15210NANA1+8519598..8520992hypothetical protein
LOC_Os01g15220OsAffx.22222.3.S1_x_at11/111+8521973..8522956expressed protein
LOC_Os01g15220OsAffx.22222.3.S1_at11/111+8521973..8522956expressed protein
LOC_Os01g15229OsAffx.22222.1.S1_x_at11/111+8524356..8525156hypothetical protein
LOC_Os01g15240NANA1+8529014..8529721hypothetical protein
LOC_Os01g15250OsAffx.23257.1.S1_at11/111+8532477..8533844expressed protein
LOC_Os01g15260OsAffx.27867.1.S1_s_at11/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15260Os.10666.1.S1_at9/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22222.3.S1_x_at--935--1751Chr01:8522417..8522441 (25 bp)
ACCTCCTGTCCTCTCGTTGCGAGGG
LOC_Os01g15220
OsAffx.22222.3.S1_x_at--284--1451Chr01:8522384..8522408 (25 bp)
AGAAGCCGGCGCTGTAGAAGCTCGC
LOC_Os01g15220
OsAffx.22222.3.S1_x_at--1001--4331Chr01:8522345..8522369 (25 bp)
CCATGTCGACGAGGTGTTCGGTCAT
LOC_Os01g15220
OsAffx.22222.3.S1_x_at--825--3491Chr01:8522344..8522368 (25 bp)
CATGTCGACGAGGTGTTCGGTCATG
LOC_Os01g15220
OsAffx.22222.3.S1_x_at--582--1051Chr01:8522334..8522358 (25 bp)
AGGTGTTCGGTCATGGGCGTGGCTG
LOC_Os01g15220
OsAffx.22222.3.S1_x_at--435--4671Chr01:8522318..8522342 (25 bp)
GCGTGGCTGGGAACTCGGCCTCTAC
LOC_Os01g15220
OsAffx.22222.3.S1_x_at--938--8472Chr04:6484532..6484551 (20 bp)
TGGCTGGGAACTCGGCCTCTACCTT
NONE
OsAffx.22222.3.S1_x_at--1065--8512Chr04:6484529..6484551 (23 bp)
TGGGAACTCGGCCTCTACCTTCCTA
NONE
OsAffx.22222.3.S1_x_at--93--4451Chr01:8522301..8522325 (25 bp)
GCCTCTACCTTCCTAGCCTTGGTGG
LOC_Os01g15220
OsAffx.22222.3.S1_x_at--1010--1731Chr01:8522295..8522319 (25 bp)
ACCTTCCTAGCCTTGGTGGCCGCGA
LOC_Os01g15220
OsAffx.22222.3.S1_x_at--1086--10651Chr01:8522292..8522316 (25 bp)
TTCCTAGCCTTGGTGGCCGCGACGG
LOC_Os01g15220
Target Sequence 
ACCTCCTGTCCTCTCGTTGCGAGGGGCTCCTCCAGAAGCCGGCGCTGTAGAAGCTCGCCCACACCTGCTTCTCCATGTCG
ACGAGGTGTTCGGTCATGGGCGTGGCTGGGAACTCGGCCTCTACCTTCCTAGCCTTGGTGGCCGCGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22222.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis