Browse Element(s) Details


Os.10666.1.S1_at

Description gb:AK107950.1
DB_XREF= gi:32993159
TID=Os.10666.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B10, full insert sequence.
FL= gb:AK107950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g152609/11Dynein light chain 1, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15190OsAffx.20440.2.S1_x_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.2.S1_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.1.S1_x_at1/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15200Os.43777.1.S1_at9/111+8517789..8518356hypothetical protein
LOC_Os01g15210NANA1+8519598..8520992hypothetical protein
LOC_Os01g15220OsAffx.22222.3.S1_x_at11/111+8521973..8522956expressed protein
LOC_Os01g15220OsAffx.22222.3.S1_at11/111+8521973..8522956expressed protein
LOC_Os01g15229OsAffx.22222.1.S1_x_at11/111+8524356..8525156hypothetical protein
LOC_Os01g15240NANA1+8529014..8529721hypothetical protein
LOC_Os01g15250OsAffx.23257.1.S1_at11/111+8532477..8533844expressed protein
LOC_Os01g15260OsAffx.27867.1.S1_s_at11/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15260Os.10666.1.S1_at9/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed
LOC_Os01g15290Os.51824.1.S1_at10/111+8552091..855394850S ribosomal protein L18, putative, expressed
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0005875cellular_componentmicrotubule associated complex
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10666.1.S1_at--904--5131NONE
GCAACTTCGGGTCCTACGTAACACA
NONE
Os.10666.1.S1_at--93--9871Chr01:8540961..8540985 (25 bp)
TACATCGATTCTAAAGCCGTCTTGC
LOC_Os01g15260
Os.10666.1.S1_at--835--4491Chr01:8540976..8541000 (25 bp)
GCCGTCTTGCTATTCAAATCTGGGT
LOC_Os01g15260
Os.10666.1.S1_at--164--10791Chr01:8541028..8541052 (25 bp)
TTGTTGTCTTGTATGCCTCTTTCCT
LOC_Os01g15260
Os.10666.1.S1_at--54--2671Chr01:8541078..8541102 (25 bp)
AAGCCTGGAATTCTGAGAGCCTGCA
LOC_Os01g15260
Os.10666.1.S1_at--741--8811Chr01:8541106..8541130 (25 bp)
TGTTGATGTATCAGCCGCGGATCTT
LOC_Os01g15260
Os.10666.1.S1_at--672--3951Chr01:8541123..8541147 (25 bp)
CGGATCTTTTCCATATTCCAGCAAA
LOC_Os01g15260
Os.10666.1.S1_at--248--6611Chr01:8541158..8541182 (25 bp)
GATTGTGTGTCTATTTTACGTCTGA
LOC_Os01g15260
Os.10666.1.S1_at--1026--7451Chr01:8541195..8541219 (25 bp)
GTGTCCTGACATTGCCTTATTGTAA
LOC_Os01g15260
Os.10666.1.S1_at--885--10193Chr08:17392386..17392407 (22 bp)
TATATTATGCATTCTCTGGCCACCC
NONE
Os.10666.1.S1_at--153--8451NONE
TGGCCACCCGGGTTGCAGAAATTGC
NONE
Target Sequence 
GCAACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTCTAAAGCCGTCTTGCTATTC
AAATCTGGGTGATTGGCGTAGNTAATATCCCCTGCGCTTGTTGTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCA
AAGCTGGAAGCCTGGAATTCTGAGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATCTTTTCCATATTCCAGCAAATGT
GAGATTAGATTGTGTGTCTATTTTACGTCTGATACATCTAGGTGGTGTCCTGACATTGCCTTATTGTAATCTGATTGCCG
GAAAGTCAGACAGAGGTTGTCATCANNNANGGTAAANCTTGTGCTGATCTGCTTATATTATGCATTCTCTGGCCACCCGG
GTTGCAGAAATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis