Browse Element(s) Details


Os.43777.1.S1_at

Description gb:CA766883
DB_XREF= gi:27548917
DB_XREF=AF53-Rpf_13_C18_T7_073.ab1
CLONE=C0004674
TID=Os.43777.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g152009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15150OsAffx.11062.1.S1_at11/111+8493282..8493653hypothetical protein
LOC_Os01g15150OsAffx.22005.1.S1_x_at1/111+8493282..8493653hypothetical protein
LOC_Os01g15170Os.33.1.S1_at11/111+8501837..8502487hypothetical protein
LOC_Os01g15180OsAffx.22722.1.S1_x_at1/111+8506180..8511940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15190OsAffx.20440.2.S1_x_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.2.S1_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.1.S1_x_at1/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15200Os.43777.1.S1_at9/111+8517789..8518356hypothetical protein
LOC_Os01g15210NANA1+8519598..8520992hypothetical protein
LOC_Os01g15220OsAffx.22222.3.S1_x_at11/111+8521973..8522956expressed protein
LOC_Os01g15220OsAffx.22222.3.S1_at11/111+8521973..8522956expressed protein
LOC_Os01g15229OsAffx.22222.1.S1_x_at11/111+8524356..8525156hypothetical protein
LOC_Os01g15240NANA1+8529014..8529721hypothetical protein
LOC_Os01g15250OsAffx.23257.1.S1_at11/111+8532477..8533844expressed protein
LOC_Os01g15260OsAffx.27867.1.S1_s_at11/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15260Os.10666.1.S1_at9/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43777.1.S1_at--1061--1331Chr01:8519588..8519612 (25 bp)
AGAGTACCTGCCTAGCCAGCTACGG
NONE
Os.43777.1.S1_at--672--1531NONE
AGCTACGGTCCATACATTCTTCTAT
NONE
Os.43777.1.S1_at--667--3211Chr01:8518224..8518248 (25 bp)
CAAGTGTGCGTGTGAGGACCCAATA
LOC_Os01g15200
Os.43777.1.S1_at--102--6191Chr01:8518211..8518235 (25 bp)
GAGGACCCAATACGAACCTTCGCAT
LOC_Os01g15200
Os.43777.1.S1_at--593--1551Chr01:8518179..8518203 (25 bp)
AGCTCGGAATCCCAATAGGCGTTTT
LOC_Os01g15200
Os.43777.1.S1_at--319--10071Chr01:8518164..8518188 (25 bp)
TAGGCGTTTTCTCAAATGCGCAAAG
LOC_Os01g15200
Os.43777.1.S1_at--568--2351Chr01:8517978..8518002 (25 bp)
AAACCAGGTTCATCGTCTTCAAGAC
LOC_Os01g15200
Os.43777.1.S1_at--816--2851Chr01:8517944..8517968 (25 bp)
AAGTGCCATGTTCTGATTGAGGACA
LOC_Os01g15200
Os.43777.1.S1_at--1088--6351Chr01:8517859..8517883 (25 bp)
GATGCCAAAGCTCTGTTAGGTTCTG
LOC_Os01g15200
Os.43777.1.S1_at--755--451Chr01:8517829..8517853 (25 bp)
ATCTGTTTTGGTTAATCCTGTTAGG
LOC_Os01g15200
Os.43777.1.S1_at--590--3871Chr01:8517812..8517836 (25 bp)
CTGTTAGGATTAGTCGCCAGCAACT
LOC_Os01g15200
Target Sequence 
AGAGTACCTGCCTAGCCAGCTACGGTCCATACATTCTTCTATGGCTTATCCCCGCCCCAGCTCAAGTGTGCGTGTGAGGA
CCCAATACGAACCTTCGCATCCCATACAGCTCGGAATCCCAATAGGCGTTTTCTCAAATGCGCAAAGAAGACAATCCGGC
GAAGAAATCATTAGTACTTTGAAGTATGAGTTGGAAGAGAAGAGAAACCAGGTTCATCGTCTTCAAGACGACATTGAGAA
GTGCCATGTTCTGATTGAGGACAATGCTGCTAAGTTGAAGGACAACGAACAGAATCGAGTGGAGCTGCAAGAACAAACTG
ACAGATGCCAAAGCTCTGTTAGGTTCTGGAAATATCTGTTTTGGTTAATCCTGTTAGGATTAGTCGCCAGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis