Browse Element(s) Details


Os.33.1.S1_at

Description gb:NM_187903.1
DB_XREF= gi:34902889
TID=Os.33.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1517011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15120Os.12708.1.S1_at11/111+8483322..8486420hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15130Os.50780.1.S1_at11/111+8487384..8489147hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15139OsAffx.22222.1.S1_x_at11/111+8489757..8490557hypothetical protein
LOC_Os01g15150OsAffx.11062.1.S1_at11/111+8493282..8493653hypothetical protein
LOC_Os01g15150OsAffx.22005.1.S1_x_at1/111+8493282..8493653hypothetical protein
LOC_Os01g15170Os.33.1.S1_at11/111+8501837..8502487hypothetical protein
LOC_Os01g15180OsAffx.22722.1.S1_x_at1/111+8506180..8511940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15190OsAffx.20440.2.S1_x_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.2.S1_at11/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15190OsAffx.20440.1.S1_x_at1/111+8512301..8515211retrotransposon protein, putative, unclassified
LOC_Os01g15200Os.43777.1.S1_at9/111+8517789..8518356hypothetical protein
LOC_Os01g15210NANA1+8519598..8520992hypothetical protein
LOC_Os01g15220OsAffx.22222.3.S1_x_at11/111+8521973..8522956expressed protein
LOC_Os01g15220OsAffx.22222.3.S1_at11/111+8521973..8522956expressed protein
LOC_Os01g15229OsAffx.22222.1.S1_x_at11/111+8524356..8525156hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33.1.S1_at--355--5911Chr01:8501894..8501918 (25 bp)
GAGCTCAAGATAGCGACGATGCTTT
LOC_Os01g15170
Os.33.1.S1_at--786--4051Chr01:8501910..8501934 (25 bp)
CGATGCTTTGGATTGACGGCGAGAA
LOC_Os01g15170
Os.33.1.S1_at--893--2191Chr01:8501976..8502000 (25 bp)
ACAAAGGACTCGGTGCTGCGGACTT
LOC_Os01g15170
Os.33.1.S1_at--508--711Chr01:8502008..8502032 (25 bp)
ATGATGGGCAGCAGTTCGTCTTGGC
LOC_Os01g15170
Os.33.1.S1_at--606--9391Chr01:8502023..8502047 (25 bp)
TCGTCTTGGCAGGAACAACGGCCGG
LOC_Os01g15170
Os.33.1.S1_at--118--9571Chr01:8502083..8502107 (25 bp)
TCTTCAGGCAGCGAGGAGATGACGA
LOC_Os01g15170
Os.33.1.S1_at--948--4211Chr01:8502158..8502182 (25 bp)
CCGCTGCTTGCCGAATTTGGTGAAG
LOC_Os01g15170
Os.33.1.S1_at--830--8531Chr01:8502186..8502210 (25 bp)
TGGACGCAGTGCCATCTCTAGAGCA
LOC_Os01g15170
Os.33.1.S1_at--151--7291Chr01:8502194..8502218 (25 bp)
GTGCCATCTCTAGAGCAGGGCCATA
LOC_Os01g15170
Os.33.1.S1_at--330--1851Chr01:8502246..8502375 (25 bp)
ACGAGGGCCCCAATCCTGTTTGGCT
LOC_Os01g15170
Os.33.1.S1_at--75--10877Chr12:7157116..7157140 (25 bp)
TTGGCTCCAGCTCATTGGCGAGATG
NONE
Target Sequence 
GAGCTCAAGATAGCGACGATGCTTTGGATTGACGGCGAGAAGGCGGCTCTGGTGATCTTCGGGCTTGACGAGGAGGTGGA
TGACAAAGGACTCGGTGCTGCGGACTTGACGACGATGATGGGCAGCAGTTCGTCTTGGCAGGAACAACGGCCGGAGGGAG
ACAATGGTGATGGGAGCGACGTTTTGGGGTCTTCAGGCAGCGAGGAGATGACGACGACGGAGATGGAGAGGTGGCTGTCT
CGGGTTGACGGCGAGGAGGGAGCTCCGCTGCTTGCCGAATTTGGTGAAGGTGTGGACGCAGTGCCATCTCTAGAGCAGGG
CCATAAGGGCGACGGCCAAGGGCCCAGCCCAAACGAGGGCCCCAATCCTGTTTGGCTCCAGCTCATTGGCGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis