Browse Element(s) Details


Os.12708.1.S1_at

Description gb:AK109484.1
DB_XREF= gi:32994693
TID=Os.12708.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G06, full insert sequence.
FL= gb:AK102341.1 gb:AK109484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1512011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15100NANA1+8468176..8468442hypothetical protein
LOC_Os01g15110Os.15140.1.S1_at11/111+8472306..8476307Syntaxin 23, putative, expressed
LOC_Os01g15110OsAffx.26720.1.S1_at1/111+8472306..8476307Syntaxin 23, putative, expressed
LOC_Os01g15120Os.12708.1.S1_at11/111+8483322..8486420hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15130Os.50780.1.S1_at11/111+8487384..8489147hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g15139OsAffx.22222.1.S1_x_at11/111+8489757..8490557hypothetical protein
LOC_Os01g15150OsAffx.11062.1.S1_at11/111+8493282..8493653hypothetical protein
LOC_Os01g15150OsAffx.22005.1.S1_x_at1/111+8493282..8493653hypothetical protein
LOC_Os01g15170Os.33.1.S1_at11/111+8501837..8502487hypothetical protein
LOC_Os01g15180OsAffx.22722.1.S1_x_at1/111+8506180..8511940retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004301molecular_functionepoxide hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12708.1.S1_at--319--5271Chr01:8485594..8485618 (25 bp)
GAATGCGCAAGGCAGCACCTCTGAT
LOC_Os01g15120
Os.12708.1.S1_at--397--9891Chr01:8485664..8485688 (25 bp)
TACTTGCCCTGCATGGCTGTCAGAA
LOC_Os01g15120
Os.12708.1.S1_at--56--10031Chr01:8485762..8486073 (25 bp)
TAGACTTGAACTGGGAGCTGACTGC
LOC_Os01g15120
Os.12708.1.S1_at--167--6431Chr01:8486123..8486147 (25 bp)
GATCAGGACCTTACGTACAACATTC
LOC_Os01g15120
Os.12708.1.S1_at--768--8271Chr01:8486185..8486209 (25 bp)
GGCATGTGTGCCAAATCTCGAAGAT
LOC_Os01g15120
Os.12708.1.S1_at--961--831Chr01:8486219..8486243 (25 bp)
ATGGAGGGTGTTGCCCATTTCATCA
LOC_Os01g15120
Os.12708.1.S1_at--438--6151Chr01:8486261..8486285 (25 bp)
GAGGTCTCCGACCATATTTGCGGGT
LOC_Os01g15120
Os.12708.1.S1_at--1023--4651Chr01:8486280..8486304 (25 bp)
GCGGGTTCTTTAGCAAGTTCTGATA
LOC_Os01g15120
Os.12708.1.S1_at--339--7351Chr01:8486306..8486330 (25 bp)
GTGCAAAATCTCTTGGAGCCTGCTT
LOC_Os01g15120
Os.12708.1.S1_at--173--8091Chr01:8486320..8486344 (25 bp)
GGAGCCTGCTTGCTAATTGTACTGT
LOC_Os01g15120
Os.12708.1.S1_at--68--591Chr01:8486361..8486385 (25 bp)
ATGCCAGTACTGATATCTTCCAAAT
LOC_Os01g15120
Target Sequence 
GAATGCGCAAGGCAGCACCTCTGATTATACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCT
GCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTA
CAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATAAAAGTTCCGACAAAATTCATCGTTG
GAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAAT
CTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTG
CGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATT
ATGCCAGTACTGATATCTTCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis