Browse Element(s) Details


Os.55538.1.S1_at

Description gb:AK108279.1
DB_XREF= gi:32993488
TID=Os.55538.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-C11, full insert sequence.
FL= gb:AK108279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5549011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55440Os.57007.1.S1_at11/114+32755775..32758622Leucine Rich Repeat family protein, expressed
LOC_Os04g55450Os.38395.3.S1_x_at11/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.4.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.2.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.5.S1_at3/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.1.S1_at1/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55480Os.49456.1.S1_at10/114+32775229..32780712Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os04g55490Os.55538.1.S1_at11/114+32782815..32783933expressed protein
LOC_Os04g55500Os.5453.1.S1_at11/114+32787254..32793839expressed protein
LOC_Os04g55510Os.25780.1.S1_s_at11/114+32803766..32809289Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55538.1.S1_at--818--7611Chr04:32783385..32783409 (25 bp)
GGGACACGGACACGCCATTCGAGAC
LOC_Os04g55490
Os.55538.1.S1_at--882--4491Chr04:32783422..32783446 (25 bp)
GCCGTCGCCATTTGGGATCACGGAG
LOC_Os04g55490
Os.55538.1.S1_at--935--4151Chr04:32783475..32783499 (25 bp)
CGCCGCCATTGTCCGTGATGAGGAA
LOC_Os04g55490
Os.55538.1.S1_at--656--11Chr04:32783540..32783564 (25 bp)
ATGGGTTTCATCGACGGCCGGCCGT
LOC_Os04g55490
Os.55538.1.S1_at--887--7331Chr04:32783744..32783768 (25 bp)
GTGCAGTGCTTGTTAGCTAGAGCTC
LOC_Os04g55490
Os.55538.1.S1_at--284--6551Chr04:32783782..32783806 (25 bp)
GATTTTCTCTCTTTGATATGTCCGG
LOC_Os04g55490
Os.55538.1.S1_at--700--8831Chr04:32783795..32783819 (25 bp)
TGATATGTCCGGTCCTTCGATTTGC
LOC_Os04g55490
Os.55538.1.S1_at--58--3651Chr04:32783809..32783833 (25 bp)
CTTCGATTTGCTGGGTTTTGTTGGT
LOC_Os04g55490
Os.55538.1.S1_at--232--3071Chr04:32783836..32783860 (25 bp)
AATCTAGCAGGTTTTCTCTAACAAT
LOC_Os04g55490
Os.55538.1.S1_at--394--2531Chr04:32783865..32783889 (25 bp)
AACTTTGTTTGCCTCATTTGCTCAT
LOC_Os04g55490
Os.55538.1.S1_at--107--4471Chr04:32783875..32783899 (25 bp)
GCCTCATTTGCTCATTTGGTTTGTC
LOC_Os04g55490
Target Sequence 
GGGACACGGACACGCCATTCGAGACGCCCGACGCCTCGCCGTCGCCATTTGGGATCACGGAGGAGGTGGAAGAAGAGGGT
GGCGAGTTCTCGCCGCCATTGTCCGTGATGAGGAAGCTGCCGCCATTGGGCGTCGTGGCGTGTCCCCCGCCATCGATGGG
TTTCATCGACGGCCGGCCGTCTCTGGGCTTCACCGATGGCCGGCCGTCGCTGACGGCGTGGTCGGGGACGGTCACCGACA
CCAACCGGGCCTCCTCGTCGTCGTCCAATCTCACCGCTCACTTCTTCTCTTCCTGGTCACCCAAGTGACAGATTGGAGGA
TTACTTGTAGTATCCATATGGAGTATTGATTTAGCAGTAGTGCAGTGCTTGTTAGCTAGAGCTCGATTGAATTCATTGAT
TTTCTCTCTTTGATATGTCCGGTCCTTCGATTTGCTGGGTTTTGTTGGTTTAATCTAGCAGGTTTTCTCTAACAATAACT
AACTTTGTTTGCCTCATTTGCTCATTTGGTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis