Browse Element(s) Details


Os.55705.1.S1_at

Description gb:AK108611.1
DB_XREF= gi:32993820
TID=Os.55705.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A09, full insert sequence.
FL= gb:AK108611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3976410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein
LOC_Os02g39764OsAffx.24652.1.S1_s_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55114.1.S1_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55705.1.S1_at10/112+24019287..24026406expressed protein
LOC_Os02g39764OsAffx.24652.1.S1_x_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.24351.1.A1_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.30311.1.S1_at1/112+24019287..24026406expressed protein
LOC_Os02g39780OsAffx.5954.5.S1_x_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.30294.1.S1_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.3.S1_x_at4/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.1.S1_x_at1/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55705.1.S1_at--77--551Chr02:24019799..24019915 (25 bp)
ATCCCGGGATATAGGTTCCTGCCAA
LOC_Os02g39764
Os.55705.1.S1_at--864--271NONE
ATAGGTTCCTGCCAACCAAGAACAG
NONE
Os.55705.1.S1_at--514--3231Chr02:24019653..24019677 (25 bp)
CAAGCAGGACAACGGCTTCAACACC
LOC_Os02g39764
Os.55705.1.S1_at--804--1931Chr02:24019642..24019666 (25 bp)
ACGGCTTCAACACCCGGGCCATTGT
LOC_Os02g39764
Os.55705.1.S1_at--693--7551Chr02:24019627..24019651 (25 bp)
GGGCCATTGTGCTGCTCGCCGTGCA
LOC_Os02g39764
Os.55705.1.S1_at--827--9331Chr02:24019612..24019636 (25 bp)
TCGCCGTGCACCCAGACTGGCAGGA
LOC_Os02g39764
Os.55705.1.S1_at--623--2191Chr02:24019530..24019554 (25 bp)
ACACAGCAGGTGTCGCTGCGGCGTC
LOC_Os02g39764
Os.55705.1.S1_at--682--4592Chr05:22176028..22176381 (25 bp)
GCGAAGGTGGCGCTTTGGCTAGAGT
NONE
Os.55705.1.S1_at--781--3671Chr02:24019334..24019358 (25 bp)
CTTTTACAGTGTTCATCTCTCCTAT
LOC_Os02g39764
Os.55705.1.S1_at--835--10531Chr02:24019323..24019347 (25 bp)
TTCATCTCTCCTATTGACCCAAAAA
LOC_Os02g39764
Os.55705.1.S1_at--628--9751Chr02:24019289..24019313 (25 bp)
TAATGTATGCGGTGTCCATCGGCAA
LOC_Os02g39764
Target Sequence 
ATCCCGGGATATAGGTTCCTGCCAACCAAGAACAGGATGTCATGGGGCATGGACAGGGAGATCAAGCGCGGCCTGGTCCG
GCTCATCGGCCGACGCAGTGGCGGCGACAGCGGCGAGGAAGACGAGACCACCACTGAGCTCAAAGACAAGCAGGACAACG
GCTTCAACACCCGGGCCATTGTGCTGCTCGCCGTGCACCCAGACTGGCAGGACCGCACCCGTGGCTCTCTCCAAGGCGGA
GCAGTGGGGGGTTTCCGTCCGCTCGGGCGACACAGCAGGTGTCGCTGCGGCGTCCCTGCACGCGTTCCTCCTCGCCGCGG
CCTCCGCTCGGGCAACGCGGCGGCCATCCCCGCACGCGTTACTCCTCGTCGCCTTCGCAGCGAAGGTGGCGCTTTGGCTA
GAGTGTGAGAGGGAGTTTGTTGAGGGAGAAAGAATATGACAAGTGGGCCCAGGGGTATTTTAGACCTTTTACAGTGTTCA
TCTCTCCTATTGACCCAAAAATTAATATTTTAATGTATGCGGTGTCCATCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis