Browse Element(s) Details


Os.7972.1.S1_at

Description gb:AK070269.1
DB_XREF= gi:32980293
TID=Os.7972.1
CNT=158
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7972 (NCBI UniGene Cluster)
UG_TITLE=MRNA for S-adenosylmethionine decarboxylase 2 (adometDC2 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047N04, full insert sequence.
FL= gb:AK062133.1 gb:AK070269.1 gb:AK070259.1 gb:AK059503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3979011/11S-adenosylmethionine decarboxylase proenzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39764OsAffx.24652.1.S1_s_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55114.1.S1_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55705.1.S1_at10/112+24019287..24026406expressed protein
LOC_Os02g39764OsAffx.24652.1.S1_x_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.24351.1.A1_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.30311.1.S1_at1/112+24019287..24026406expressed protein
LOC_Os02g39780OsAffx.5954.5.S1_x_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.30294.1.S1_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.3.S1_x_at4/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.1.S1_x_at1/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein
LOC_Os02g39820Os.17834.1.S1_at11/112+24053450..24056824expressed protein
LOC_Os02g39830OsAffx.12419.1.S1_at9/112+24057385..24060558Enhancer of rudimentary family protein, expressed
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0004014molecular_functionadenosylmethionine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7972.1.S1_at--52--10791Chr02:24041136..24041160 (25 bp)
TTGATCTGGCGAGGTGCACCATTGT
LOC_Os02g39790
Os.7972.1.S1_at--217--5911Chr02:24041165..24041189 (25 bp)
GAGCTCTCCAATGAGGTCTTCGACT
LOC_Os02g39790
Os.7972.1.S1_at--653--6912Chr02:24041191..24041215 (25 bp)
GTATGTCCTTTCTGAATCGAGCCTC
LOC_Os02g39790
Os.7972.1.S1_at--512--3051Chr02:24041205..24041229 (25 bp)
AATCGAGCCTCTTTGTGTACCCATA
LOC_Os02g39790
Os.7972.1.S1_at--297--9331Chr02:24041271..24041295 (25 bp)
TCGCCATTCCGAGGATTCTTGAGCT
LOC_Os02g39790
Os.7972.1.S1_at--153--5371Chr02:24041300..24041324 (25 bp)
GAAGAGCTATCTCTGCCACTTGAAG
LOC_Os02g39790
Os.7972.1.S1_at--486--7011Chr02:24041332..24041356 (25 bp)
GTACTCTCGTGGGACATTCATTTTT
LOC_Os02g39790
Os.7972.1.S1_at--1142--111Chr02:24041347..24041371 (25 bp)
ATTCATTTTTCCTGAAGCACAGCCC
LOC_Os02g39790
Os.7972.1.S1_at--963--971Chr02:24041394..24041418 (25 bp)
AGGAGGTTGCAGTCCTGAACCGCTA
LOC_Os02g39790
Os.7972.1.S1_at--339--8351Chr02:24041423..24041447 (25 bp)
GGCGGTCTCAAATCTGGTGGCAACG
LOC_Os02g39790
Os.7972.1.S1_at--685--5951Chr02:24041516..24041540 (25 bp)
GAGCAACCTGTGGTCACTCTTGAGA
LOC_Os02g39790
Target Sequence 
TTGATCTGGCGAGGTGCACCATTGTGTCTGAGCTCTCCAATGAGGTCTTCGACTCGTATGTCCTTTCTGAATCGAGCCTC
TTTGTGTACCCATACAAGATTGTGATCAAGACCTGTGGGACTACCAAGCTCCTGCTCGCCATTCCGAGGATTCTTGAGCT
TGCTGAAGAGCTATCTCTGCCACTTGAAGCTGTGAAGTACTCTCGTGGGACATTCATTTTTCCTGAAGCACAGCCCTCTC
CACACAAGAACTTCTCTGAGGAGGTTGCAGTCCTGAACCGCTACTTCGGCGGTCTCAAATCTGGTGGCAACGCATACGTG
ATTGGAGATCCTGCAAAGCCAGGGCAGAAGTGGCATGTCTACTATGCCACCCAGCACCCGGAGCAACCTGTGGTCACTCT
TGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis