Browse Element(s) Details


Os.55114.1.S1_at

Description gb:AK107511.1
DB_XREF= gi:32992720
TID=Os.55114.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E11, full insert sequence.
FL= gb:AK107511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3976411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein
LOC_Os02g39764OsAffx.24652.1.S1_s_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55114.1.S1_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55705.1.S1_at10/112+24019287..24026406expressed protein
LOC_Os02g39764OsAffx.24652.1.S1_x_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.24351.1.A1_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.30311.1.S1_at1/112+24019287..24026406expressed protein
LOC_Os02g39780OsAffx.5954.5.S1_x_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.30294.1.S1_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.3.S1_x_at4/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.1.S1_x_at1/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55114.1.S1_at--585--8931Chr02:24024497..24024521 (25 bp)
TGACCTCTGCTTTCTGACAACAAAC
LOC_Os02g39764
Os.55114.1.S1_at--715--931Chr02:24024465..24024489 (25 bp)
AGGCACTGTTTTACTGGCTATATTG
LOC_Os02g39764
Os.55114.1.S1_at--384--6091Chr02:24024441..24024465 (25 bp)
GAGTACCACATGTATAGTTTGCCAC
LOC_Os02g39764
Os.55114.1.S1_at--19--1211Chr02:24024426..24024450 (25 bp)
AGTTTGCCACAGTGAGGCCTTAGCA
LOC_Os02g39764
Os.55114.1.S1_at--902--1111Chr02:24024416..24024440 (25 bp)
AGTGAGGCCTTAGCAGTTTCTCTGT
LOC_Os02g39764
Os.55114.1.S1_at--903--6831Chr02:24024401..24024425 (25 bp)
GTTTCTCTGTGTTTCGTACTTCAAC
LOC_Os02g39764
Os.55114.1.S1_at--740--10191Chr02:24024357..24024381 (25 bp)
TATATGTCCTTACTTTCTTTTCTAT
LOC_Os02g39764
Os.55114.1.S1_at--930--791Chr02:24024230..24024254 (25 bp)
ATGGGTGAGTACACTGCTACCACTT
LOC_Os02g39764
Os.55114.1.S1_at--1032--4851Chr02:24024215..24024239 (25 bp)
GCTACCACTTGCCATTTTAAACTGT
LOC_Os02g39764
Os.55114.1.S1_at--651--7531Chr02:24024189..24024213 (25 bp)
GTGGCAAACGACAACTTATTCAGCT
LOC_Os02g39764
Os.55114.1.S1_at--529--2711Chr02:24024056..24024080 (25 bp)
AAGCATAGTTGTTTCCACTTACCAA
LOC_Os02g39764
Target Sequence 
TGACCTCTGCTTTCTGACAACAAACTAAAACCAGGCACTGTTTTACTGGCTATATTGAGTACCACATGTATAGTTTGCCA
CAGTGAGGCCTTAGCAGTTTCTCTGTGTTTCGTACTTCAACTTTTTTTATTTGAAAATAATATATGTCCTTACTTTCTTT
TCTATAATGAAGTTTGTTGGCTTCAAGTGTTTTGAGTGCCAAAGGGGACGATACACTGGTGCCTCTGAGAAATTTGTGAA
GTACTACAGATCACTTTACCATGGAGAATGGGTGAGTACACTGCTACCACTTGCCATTTTAAACTGTTGTGGCAAACGAC
AACTTATTCAGCTAGTATCAGGATAATCTCTTTTTTTTCACATGCATTATTTCTGAATGCAAAACATGTCAGATATCGAC
TTGGGTACACAATACCAATGATAAGGCCATGTAAAACTAACAAGCATAGTTGTTTCCACTTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis