Browse Element(s) Details


Os.7972.1.S2_at

Description gb:AK070259.1
DB_XREF= gi:32980283
TID=Os.7972.1
CNT=158
FEA=FLmRNA
TIER=FL+Stack
STK=64
UG=Os.7972 (NCBI UniGene Cluster)
UG_TITLE=MRNA for S-adenosylmethionine decarboxylase 2 (adometDC2 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041P13, full insert sequence.
FL= gb:AK062133.1 gb:AK070269.1 gb:AK070259.1 gb:AK059503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3979011/11S-adenosylmethionine decarboxylase proenzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39764OsAffx.24652.1.S1_s_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55114.1.S1_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55705.1.S1_at10/112+24019287..24026406expressed protein
LOC_Os02g39764OsAffx.24652.1.S1_x_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.24351.1.A1_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.30311.1.S1_at1/112+24019287..24026406expressed protein
LOC_Os02g39780OsAffx.5954.5.S1_x_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.30294.1.S1_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.3.S1_x_at4/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.1.S1_x_at1/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein
LOC_Os02g39820Os.17834.1.S1_at11/112+24053450..24056824expressed protein
LOC_Os02g39830OsAffx.12419.1.S1_at9/112+24057385..24060558Enhancer of rudimentary family protein, expressed
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0004014molecular_functionadenosylmethionine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7972.1.S2_at--897--8791Chr02:24041866..24041890 (25 bp)
TGTTGCGGTTACCATCTTTGGTGGC
LOC_Os02g39790
Os.7972.1.S2_at--999--10831Chr02:24041883..24041907 (25 bp)
TTGGTGGCCGCAACCATGCAGGGAC
LOC_Os02g39790
Os.7972.1.S2_at--361--71Chr02:24041937..24041961 (25 bp)
ATTCTTGCAGCAACATGGTTGAGCA
LOC_Os02g39790
Os.7972.1.S2_at--260--1371Chr02:24041994..24042018 (25 bp)
AGAGCTTCACTGCTACTGCTGAAAT
LOC_Os02g39790
Os.7972.1.S2_at--363--9911Chr02:24042007..24042031 (25 bp)
TACTGCTGAAATCGCCACCGGGTCG
LOC_Os02g39790
Os.7972.1.S2_at--985--7791Chr02:24042027..24042051 (25 bp)
GGTCGCCACGATCTGTTCTGCATTG
LOC_Os02g39790
Os.7972.1.S2_at--998--471Chr02:24042037..24042061 (25 bp)
ATCTGTTCTGCATTGCTTTGCTGAT
LOC_Os02g39790
Os.7972.1.S2_at--306--1991Chr02:24042215..24042239 (25 bp)
ACTCTGTTACTTTGTGAAGCAGCCA
LOC_Os02g39790
Os.7972.1.S2_at--675--2711Chr02:24042231..24042255 (25 bp)
AAGCAGCCAGCCAGACTATTCATAT
LOC_Os02g39790
Os.7972.1.S2_at--455--6891Chr02:24042263..24042287 (25 bp)
GTATATGCTATGACCAATGTTCTTT
LOC_Os02g39790
Os.7972.1.S2_at--835--5851Chr02:24042274..24042298 (25 bp)
GACCAATGTTCTTTATTATCTTGCA
LOC_Os02g39790
Target Sequence 
TGTTGCGGTTACCATCTTTGGTGGCCGCAACCATGCAGGGACCTGGGCCAAGGGGCTGGATGTCGGGGCCTATTCTTGCA
GCAACATGGTTGAGCAGGAGCTGCCTTCTGGGGGTTTGCTCATTTACCAGAGCTTCACTGCTACTGCTGAAATCGCCACC
GGGTCGCCACGATCTGTTCTGCATTGCTTTGCTGATGAAAACACNGGAGAAAGCTGGTAAAATGGAGGCTCTCTACTGGG
AAGACGATGCTGTCGAGGAGATAGATGGCACAGAGGGTAAGAAGATGAGGAGCTGCTGATGAGGGAAGCGCACTGAAGAT
TAAAGAATACTCAAAACTCCANTAGCGATCACTCTGTTACTTTGTGAAGCAGCCAGCCAGACTATTCATATAGTACTAGT
ATATGCTATGACCAATGTTCTTTATTATCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7972.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis