Browse Element(s) Details


OsAffx.12419.1.S1_at

Description tigr:9630.m03836
TID=OsAffx.12419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Enhancer of rudimentary
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g398309/11Enhancer of rudimentary family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39780OsAffx.5954.5.S1_x_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.30294.1.S1_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.3.S1_x_at4/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.1.S1_x_at1/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein
LOC_Os02g39820Os.17834.1.S1_at11/112+24053450..24056824expressed protein
LOC_Os02g39830OsAffx.12419.1.S1_at9/112+24057385..24060558Enhancer of rudimentary family protein, expressed
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39850Os.7870.1.S1_at11/112+24074835..24078746Transferase family protein, expressed
LOC_Os02g39860NANA2+24081546..24083402retrotransposon protein, putative, unclassified
LOC_Os02g39870OsAffx.24653.1.S1_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39870Os.22653.1.S1_s_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12419.1.S1_at--200--8511Chr02:24060309..24060333 (25 bp)
TGTGCCGTCGGGAAGGTCCCTACCT
LOC_Os02g39830
OsAffx.12419.1.S1_at--474--3771NONE
CTCTCGATGGCTGGGAGGCACACCA
NONE
OsAffx.12419.1.S1_at--714--651Chr02:24058476..24058500 (25 bp)
ATGCAACCATCCCAAAACAGGGCTT
LOC_Os02g39830
OsAffx.12419.1.S1_at--680--2111Chr02:24058460..24058484 (25 bp)
ACAGGGCTTCTAGAACATTTATGGA
LOC_Os02g39830
OsAffx.12419.1.S1_at--346--3611NONE
CATTGGATGGACTGTGTGGTCTTTA
NONE
OsAffx.12419.1.S1_at--247--10071Chr02:24057877..24057901 (25 bp)
TAGGGACATAAACCCAATGGTACCA
LOC_Os02g39830
OsAffx.12419.1.S1_at--242--8831Chr02:24057841..24057865 (25 bp)
TGATATCACTGACCTCTATAACTTC
LOC_Os02g39830
OsAffx.12419.1.S1_at--837--2511Chr02:24057822..24057846 (25 bp)
AACTTCATTGATGGCCTAGCTGACA
LOC_Os02g39830
OsAffx.12419.1.S1_at--495--1611Chr02:24057809..24057829 (21 bp)
AGCTGACATCAGTGCACTAGTTTAT
LOC_Os02g39830
OsAffx.12419.1.S1_at--987--8831Chr02:24057671..24057695 (25 bp)
TGATCACTCAATTCAGGCATTTCTG
LOC_Os02g39830
OsAffx.12419.1.S1_at--1104--911Chr02:24057657..24057681 (25 bp)
AGGCATTTCTGCCATATGATCGACA
LOC_Os02g39830
Target Sequence 
TGTGCCGTCGGGAAGGTCCCTACCTGTGCGCCGCCTTCTCCAAGTCCGTCGCAAGTGACCCGCCCGCGCTCTCGATGGCT
GGGAGGCACACCATTATTCTGATGCAACCATCCCAAAACAGGGCTTCTAGAACATTTATGGATTATAATTCAATTAACCA
TGCATTGGATGGACTGTGTGGTCTTTATGAAAGGAAAATTAGGGACATAAACCCAATGGTACCAAACATAACATATGATA
TCACTGACCTCTATAACTTCATTGATGGCCTAGCTGACATCAGTGCACTAGTTTATGATCACTCAATTCAGGCATTTCTG
CCATATGATCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis