Browse Element(s) Details


OsAffx.24653.1.S1_at

Description tigr:9630.m03841
TID=OsAffx.24653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=co-chaperone GrpE, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3987011/11co-chaperone GrpE family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39830OsAffx.12419.1.S1_at9/112+24057385..24060558Enhancer of rudimentary family protein, expressed
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39850Os.7870.1.S1_at11/112+24074835..24078746Transferase family protein, expressed
LOC_Os02g39860NANA2+24081546..24083402retrotransposon protein, putative, unclassified
LOC_Os02g39870OsAffx.24653.1.S1_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39870Os.22653.1.S1_s_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39880OsAffx.2921.1.S1_at11/112+24089986..24091709expressed protein
LOC_Os02g39890Os.25111.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39890Os.57134.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39900Os.14919.1.S1_at2/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900Os.56216.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900OsAffx.29313.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24653.1.S1_at--696--5991Chr02:24087559..24087583 (25 bp)
GAGACTGTTGGCAAACCATTTGATC
LOC_Os02g39870
OsAffx.24653.1.S1_at--1158--2631Chr02:24087572..24087839 (25 bp)
AACCATTTGATCCTATGCTTCATGA
LOC_Os02g39870
OsAffx.24653.1.S1_at--413--6371Chr02:24087580..24087847 (25 bp)
GATCCTATGCTTCATGAGGCTATTA
LOC_Os02g39870
OsAffx.24653.1.S1_at--258--7691Chr02:24087878..24087902 (25 bp)
GGGTCATCCTTCAGGAATTTCGTAA
LOC_Os02g39870
OsAffx.24653.1.S1_at--893--3631Chr02:24088185..24088209 (25 bp)
CTTCCTGCTGTTGACGCTGAGTGTT
LOC_Os02g39870
OsAffx.24653.1.S1_at--1008--4731Chr02:24088191..24088215 (25 bp)
GCTGTTGACGCTGAGTGTTGATATT
LOC_Os02g39870
OsAffx.24653.1.S1_at--559--2251Chr02:24088222..24088246 (25 bp)
AAATTTCTGTTTCCTCCGCGTGTGG
LOC_Os02g39870
OsAffx.24653.1.S1_at--369--9271Chr02:24088233..24088257 (25 bp)
TCCTCCGCGTGTGGTCAATTGTTAT
LOC_Os02g39870
OsAffx.24653.1.S1_at--870--5591Chr02:24088264..24088288 (25 bp)
GAAATTTTCTCCGTTCATCGAGCAG
LOC_Os02g39870
OsAffx.24653.1.S1_at--614--10311Chr02:24088269..24088293 (25 bp)
TTTCTCCGTTCATCGAGCAGTTGCA
LOC_Os02g39870
OsAffx.24653.1.S1_at--654--491Chr02:24088322..24088346 (25 bp)
ATCGGTTGGGAGTATTGGAGATCAT
LOC_Os02g39870
Target Sequence 
GAGACTGTTGGCAAACCATTTGATCCTATGCTTCATGAGGCTATTATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGT
CATCCTTCAGGAATTTCGTAAGGGTTTTAAACTTGGGGAGAGATTATTGCGCCCTGCTATGGTCAAGGTGTCTGCAGGAC
CAGGCCCTGAAAAACCCGTGTATGACGATCCTGCGATGGTTGAAGATAGTGTAGCACCTCAAAAGGTCAAGGAGGCTGAA
GATGATGGTTTTGATGATGATAATGCTGAGTGATGGGGCTTTATTTTTTATTTCACAGGAAAAGTCCAGAAATTTTGATG
TTTTTCTGGAATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCTGCTGTTGACGC
TGAGTGTTGATATTGCCTCAAAATTTCTGTTTCCTCCGCGTGTGGTCAATTGTTATGGTTAGGAAATTTTCTCCGTTCAT
CGAGCAGTTGCAATGATAAGCAGAGGTAAATTGGTTTTTGATCGGTTGGGAGTATTGGAGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis