Browse Element(s) Details


Os.25111.1.S1_at

Description gb:AY278997.1
DB_XREF= gi:30692290
TID=Os.25111.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.25111 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) cap-binding protein CBP20 mRNA, complete cds.
PROD=cap-binding protein CBP20
FL= gb:AK069360.1 gb:AK101546.1 gb:AY278997.1 gb:AK061262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3989011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39850Os.7870.1.S1_at11/112+24074835..24078746Transferase family protein, expressed
LOC_Os02g39860NANA2+24081546..24083402retrotransposon protein, putative, unclassified
LOC_Os02g39870OsAffx.24653.1.S1_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39870Os.22653.1.S1_s_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39880OsAffx.2921.1.S1_at11/112+24089986..24091709expressed protein
LOC_Os02g39890Os.25111.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39890Os.57134.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39900Os.14919.1.S1_at2/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900Os.56216.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900OsAffx.29313.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016070biological_processRNA metabolism
GO:0005845cellular_componentmRNA cap complex
GO:0000339molecular_functionRNA cap binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25111.1.S1_at--1021--8491Chr02:24094906..24094930 (25 bp)
TGGAGATTCTTACCGGAACGACAGA
LOC_Os02g39890
Os.25111.1.S1_at--18--1651Chr02:24094773..24094797 (25 bp)
AGCGATCGTCGCAAAGAGCACCTGA
LOC_Os02g39890
Os.25111.1.S1_at--808--151Chr02:24094570..24094594 (25 bp)
ATTATGATAAGAGACGCCGGCGCTG
LOC_Os02g39890
Os.25111.1.S1_at--66--811Chr02:24094514..24094538 (25 bp)
ATGGGCAGTTGCAGTGACTACACTA
LOC_Os02g39890
Os.25111.1.S1_at--1027--2011Chr02:24094498..24094522 (25 bp)
ACTACACTAGTAAAGCCCGTCGAGC
LOC_Os02g39890
Os.25111.1.S1_at--469--7211Chr02:24094480..24094504 (25 bp)
GTCGAGCTTATGTTTTTTACCCTGT
LOC_Os02g39890
Os.25111.1.S1_at--76--1811Chr02:24094462..24094486 (25 bp)
ACCCTGTTGTGTACCATATGACTTA
LOC_Os02g39890
Os.25111.1.S1_at--630--251Chr02:24094436..24094460 (25 bp)
ATATCTGTCGTCAGCTCATTTCTAT
LOC_Os02g39890
Os.25111.1.S1_at--131--3591Chr02:24094420..24094444 (25 bp)
CATTTCTATGTTGCGGTTCATCACC
LOC_Os02g39890
Os.25111.1.S1_at--752--6732Chr05:13798114..13798161 (25 bp)
GTTCATCACCACATGCTTGCATAGG
NONE
Os.25111.1.S1_at--490--7171Chr02:24094381..24094405 (25 bp)
GTCTCGCATGCGACTGGGAATGGAT
LOC_Os02g39890
Target Sequence 
TGGAGATTCTTACCGGAACGACAGAGATTACCAACGGAAACGTTACCGGAACGATGAGCGATCGTCGCAAAGAGCACCTG
ACTNTGAGTTCAAGAGAGATGCGATTGATTCGGAGAAGAATCCTAGGTTTCGTGAGAAAGGTGATTCTGATGAAGAAGAC
GATGATTATGATAAGAGACGCCGGCGCTGAACTGAAAGAAACAATTGCTGATAAATGCAAATGGGCAGTTGCAGTGACTA
CACTAGTAAAGCCCGTCGAGCTTATGTTTTTTACCCTGTTGTGTACCATATGACTTATATATCTGTCGTCAGCTCATTTC
TATGTTGCGGTTCATCACCACATGCTTGCATAGGTCTCGCATGCGACTGGGAATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis