Browse Element(s) Details


Os.22653.1.S1_s_at

Description gb:BI305618
DB_XREF= gi:14980940
DB_XREF=NL_1_B17
CLONE=NL_1_B17
TID=Os.22653.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22653 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568356.1 (A.thaliana) chloroplast GrpE protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3987011/11co-chaperone GrpE family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39830OsAffx.12419.1.S1_at9/112+24057385..24060558Enhancer of rudimentary family protein, expressed
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39850Os.7870.1.S1_at11/112+24074835..24078746Transferase family protein, expressed
LOC_Os02g39860NANA2+24081546..24083402retrotransposon protein, putative, unclassified
LOC_Os02g39870OsAffx.24653.1.S1_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39870Os.22653.1.S1_s_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39880OsAffx.2921.1.S1_at11/112+24089986..24091709expressed protein
LOC_Os02g39890Os.25111.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39890Os.57134.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39900Os.14919.1.S1_at2/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900Os.56216.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900OsAffx.29313.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22653.1.S1_s_at--376--5551Chr02:24087103..24087127 (25 bp)
GAAACTGGTGCAGATGATGCCGCTG
LOC_Os02g39870
Os.22653.1.S1_s_at--759--6351Chr02:24087118..24087142 (25 bp)
GATGCCGCTGCAGCCACAGAAGAAA
LOC_Os02g39870
Os.22653.1.S1_s_at--597--2451Chr02:24087137..24087161 (25 bp)
AAGAAACTCCCTCTGTTATTGTCAC
LOC_Os02g39870
Os.22653.1.S1_s_at--615--6791Chr02:24087151..24087175 (25 bp)
GTTATTGTCACAGCATTGCAATCAT
LOC_Os02g39870
Os.22653.1.S1_s_at--516--4131Chr02:24087213..24087237 (25 bp)
CGCTGAGATAGAGGACTTTTTATTC
LOC_Os02g39870
Os.22653.1.S1_s_at--54--8051Chr02:24087249..24087273 (25 bp)
GGAGAAAAATTCTCTTTTGAGCAAA
LOC_Os02g39870
Os.22653.1.S1_s_at--172--10711Chr02:24087265..24087289 (25 bp)
TTGAGCAAAATCAGTACCTTAGGTG
LOC_Os02g39870
Os.22653.1.S1_s_at--833--6691Chr02:24087278..24087302 (25 bp)
GTACCTTAGGTGCAGAATTGACAAC
LOC_Os02g39870
Os.22653.1.S1_s_at--418--3171Chr02:24087293..24087317 (25 bp)
AATTGACAACTGAGCGAGACCGTAT
LOC_Os02g39870
Os.22653.1.S1_s_at--1107--8911Chr02:24087303..24087327 (25 bp)
TGAGCGAGACCGTATCTTGAGGATA
LOC_Os02g39870
Os.22653.1.S1_s_at--1012--1351Chr02:24087366..24087390 (25 bp)
AGAGAAGCTTTCGTTGATGACAAAT
LOC_Os02g39870
Target Sequence 
GAAACTGGTGCAGATGATGCCGCTGCAGCCACAGAAGAAACTCCCTCTGTTATTGTCACAGCATTGCAATCATACAAGGA
AGCTTTGATTAATGATGATGAAACAAAAGTCGCTGAGATAGAGGACTTTTTATTCTCTATTGAGGAGGAGAAAAATTCTC
TTTTGAGCAAAATCAGTACCTTAGGTGCAGAATTGACAACTGAGCGAGACCGTATCTTGAGGATAAGTGCTGACTTTGAT
AACTACAGGAAAAGGGTAGAAAGAGAGAAGCTTTCGTTGATGACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22653.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis