Browse Element(s) Details


Os.7870.1.S1_at

Description gb:AK060705.1
DB_XREF= gi:32970723
TID=Os.7870.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G09, full insert sequence.
FL= gb:AK104319.1 gb:AK060705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3985011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein
LOC_Os02g39820Os.17834.1.S1_at11/112+24053450..24056824expressed protein
LOC_Os02g39830OsAffx.12419.1.S1_at9/112+24057385..24060558Enhancer of rudimentary family protein, expressed
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39850Os.7870.1.S1_at11/112+24074835..24078746Transferase family protein, expressed
LOC_Os02g39860NANA2+24081546..24083402retrotransposon protein, putative, unclassified
LOC_Os02g39870OsAffx.24653.1.S1_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39870Os.22653.1.S1_s_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39880OsAffx.2921.1.S1_at11/112+24089986..24091709expressed protein
LOC_Os02g39890Os.25111.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39890Os.57134.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7870.1.S1_at--247--2131Chr02:24078156..24078180 (25 bp)
ACAGGATGGACAGCGGCTACTGCCG
LOC_Os02g39850
Os.7870.1.S1_at--673--9671Chr02:24078267..24078291 (25 bp)
TCACCAGCTGGGTCCGACTGCCGAT
LOC_Os02g39850
Os.7870.1.S1_at--635--5331Chr02:24078436..24078460 (25 bp)
GAAGTTCCGCAAGATGATCTTCGAC
LOC_Os02g39850
Os.7870.1.S1_at--219--1311Chr02:24078447..24078471 (25 bp)
AGATGATCTTCGACTTCTGATCCTC
LOC_Os02g39850
Os.7870.1.S1_at--562--5091Chr02:24078500..24078524 (25 bp)
GCACGAACGCGCACATGCATGGAGA
LOC_Os02g39850
Os.7870.1.S1_at--1088--8571Chr02:24078535..24078559 (25 bp)
TGGTTCTTAACACAGCCTATCATCG
LOC_Os02g39850
Os.7870.1.S1_at--682--4451Chr02:24078549..24078573 (25 bp)
GCCTATCATCGGTAGGATGCAGCAA
LOC_Os02g39850
Os.7870.1.S1_at--256--1491Chr02:24078569..24078593 (25 bp)
AGCAACGATTCTTTGATTCCACACG
LOC_Os02g39850
Os.7870.1.S1_at--1027--71Chr02:24078584..24078608 (25 bp)
ATTCCACACGTTAGTTCCTGCAAAT
LOC_Os02g39850
Os.7870.1.S1_at--873--4211Chr02:24078627..24078651 (25 bp)
CCGCTTTTGGGCAGGACACATTTTG
LOC_Os02g39850
Os.7870.1.S1_at--93--5631Chr02:24078641..24078665 (25 bp)
GACACATTTTGTGCCAACTGTATTT
LOC_Os02g39850
Target Sequence 
ACAGGATGGACAGCGGCTACTGCCGGTCGGCGCTGGACTACCTGGAGCTGCAGCCCGACCTGTCGGCGCTGGTCCGCGGC
GCGCACACGTTCCGGTGCCCCAACCTCGGCCTCACCAGCTGGGTCCGACTGCCGATCCACGACGCCGACTTCGGCTGGGG
GCGGCCGGTGTTCATGGGCCCCGGCGGCATCGCGTACGAGGGGCTCGCCTTCGTGCTCCCCAGCGCCAGCGGCGACGGCA
GCCTGTCGGTGGCCATCTCGCTGCAGGCCGAGCACATGGAGAAGTTCCGCAAGATGATCTTCGACTTCTGATCCTCTGAA
ATCAAACAACACGTACGTACGCACGCACGAACGCGCACATGCATGGAGAGGAGGCGGGGTGGTTCTTAACACAGCCTATC
ATCGGTAGGATGCAGCAACGATTCTTTGATTCCACACGTTAGTTCCTGCAAATTTTTCCCTTCCTGCCTTCCCGCTTTTG
GGCAGGACACATTTTGTGCCAACTGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis