Browse Element(s) Details


OsAffx.2921.1.S1_at

Description tigr:9630.m03842
TID=OsAffx.2921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3988011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39850Os.7870.1.S1_at11/112+24074835..24078746Transferase family protein, expressed
LOC_Os02g39860NANA2+24081546..24083402retrotransposon protein, putative, unclassified
LOC_Os02g39870OsAffx.24653.1.S1_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39870Os.22653.1.S1_s_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39880OsAffx.2921.1.S1_at11/112+24089986..24091709expressed protein
LOC_Os02g39890Os.25111.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39890Os.57134.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39900Os.14919.1.S1_at2/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900Os.56216.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class
LOC_Os02g39900OsAffx.29313.1.S1_at1/112+24104163..24108171transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2921.1.S1_at--746--4811Chr02:24090032..24090056 (25 bp)
GCTCTGCCTTCGACAACGAGATGGA
LOC_Os02g39880
OsAffx.2921.1.S1_at--564--7171Chr02:24090286..24090309 (24 bp)
GTCGGCCAGTACCTCAATTTCAAGG
LOC_Os02g39880
OsAffx.2921.1.S1_at--482--1051Chr02:24091460..24091483 (24 bp)
AGGTGTACCAGCTGCTCGGTGAGCC
LOC_Os02g39880
OsAffx.2921.1.S1_at--336--931Chr02:24091484..24091508 (25 bp)
AGGCACCTACTACGGTGTTCGATTT
LOC_Os02g39880
OsAffx.2921.1.S1_at--465--2271Chr02:24091516..24091540 (25 bp)
AAATCCCATGGGTGACAGAATTTCC
LOC_Os02g39880
OsAffx.2921.1.S1_at--409--2771Chr02:24091555..24091579 (25 bp)
AAGACCCTCAATATGTTGGCAGCAT
LOC_Os02g39880
OsAffx.2921.1.S1_at--962--1511Chr02:24091575..24091599 (25 bp)
AGCATGCTCAGCCTTGTGGCACTGC
LOC_Os02g39880
OsAffx.2921.1.S1_at--753--7531Chr02:24091590..24091614 (25 bp)
GTGGCACTGCTTTGTTGGGTTCCAT
LOC_Os02g39880
OsAffx.2921.1.S1_at--966--7671Chr02:24091606..24091630 (25 bp)
GGGTTCCATTCCAATATGTTCTTCT
LOC_Os02g39880
OsAffx.2921.1.S1_at--490--3111Chr02:24091618..24091642 (25 bp)
AATATGTTCTTCTCTGGTGCCTCGG
LOC_Os02g39880
OsAffx.2921.1.S1_at--185--4291Chr02:24091637..24091661 (25 bp)
CCTCGGCTACGTTTTCATGATGTGG
LOC_Os02g39880
Target Sequence 
GCTCTGCCTTCGACAACGAGATGGAAATGGCGGCGGCGGCCGTCGGCGTGCTGCTGCCGTTCCCGTTCTACTGGGCGCTC
TGGAACCACCCGCAGCGGTGGGTCGACCTGTGCGGCGGAGGCGGCGGCGGCGTGGACCCGTGCCGCCGGATGGCGCAGGT
GTCCCACGTCCTCAAGGCGCTGCAGCTCCTCGCCCTCGCCTCCGTCGCCTCCTTCTCCTGGCCGCCGCCGCTCTACTCCG
TCGCCCTCCTCGCCGTCGGCCAGTACCTCAATTTCAAGGTGTACCAGCTGCTCGGTGAGCCAGGCACCTACTACGGTGTT
CGATTTGGAAAGAAAATCCCATGGGTGACAGAATTTCCATTTGGTTATATCAAAGACCCTCAATATGTTGGCAGCATGCT
CAGCCTTGTGGCACTGCTTTGTTGGGTTCCATTCCAATATGTTCTTCTCTGGTGCCTCGGCTACGTTTTCATGATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis