Browse Element(s) Details


Os.15564.1.S1_at

Description gb:AK072083.1
DB_XREF= gi:32982106
TID=Os.15564.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118N03, full insert sequence.
FL= gb:AK072083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3984011/11Eukaryotic initiation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein
LOC_Os02g39820Os.17834.1.S1_at11/112+24053450..24056824expressed protein
LOC_Os02g39830OsAffx.12419.1.S1_at9/112+24057385..24060558Enhancer of rudimentary family protein, expressed
LOC_Os02g39840Os.15564.1.S1_at11/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39840OsAffx.467.1.S1_at1/112+24062470..24068894Eukaryotic initiation factor, putative, expressed
LOC_Os02g39850Os.7870.1.S1_at11/112+24074835..24078746Transferase family protein, expressed
LOC_Os02g39860NANA2+24081546..24083402retrotransposon protein, putative, unclassified
LOC_Os02g39870OsAffx.24653.1.S1_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39870Os.22653.1.S1_s_at11/112+24085071..24088402co-chaperone GrpE family protein, expressed
LOC_Os02g39880OsAffx.2921.1.S1_at11/112+24089986..24091709expressed protein
LOC_Os02g39890Os.25111.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed
LOC_Os02g39890Os.57134.1.S1_at11/112+24092282..24097429RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006413biological_processtranslational initiation
GO:0009615biological_processresponse to virus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15564.1.S1_at--764--3651Chr02:24063022..24063046 (25 bp)
CTTATTACTGATGTCCTAACTGGGA
LOC_Os02g39840
Os.15564.1.S1_at--49--6951Chr02:24062971..24062995 (25 bp)
GTAGTTGGCAGGTTTTGCCCTTTCA
LOC_Os02g39840
Os.15564.1.S1_at--322--8291Chr02:24062799..24062823 (25 bp)
GGCTACTCCTCTTGTAACAGGTACT
LOC_Os02g39840
Os.15564.1.S1_at--910--2491Chr02:24062784..24062808 (25 bp)
AACAGGTACTGCTGCGTGTTGGCAA
LOC_Os02g39840
Os.15564.1.S1_at--210--1551Chr02:24062760..24062784 (25 bp)
AGCATACTTGTTAGCGTTGGGTACA
LOC_Os02g39840
Os.15564.1.S1_at--263--6411Chr02:24062706..24062730 (25 bp)
GATCTGATGTAATTCTTCCAGCCAA
LOC_Os02g39840
Os.15564.1.S1_at--993--3631Chr02:24062692..24062716 (25 bp)
CTTCCAGCCAATCTCATGACAATTT
LOC_Os02g39840
Os.15564.1.S1_at--506--9051Chr02:24062632..24062656 (25 bp)
TGCAGTCTTATCTTCTCATCTGAGG
LOC_Os02g39840
Os.15564.1.S1_at--455--3151Chr02:24062588..24062612 (25 bp)
AATTCGTACTGTTTGCATTTCGCGC
LOC_Os02g39840
Os.15564.1.S1_at--1087--4571Chr02:24062567..24062591 (25 bp)
GCGCTCTTGCGTGTCATGAATCTGA
LOC_Os02g39840
Os.15564.1.S1_at--492--5251Chr02:24062550..24062574 (25 bp)
GAATCTGATGGCCTCATTGTTTCGC
LOC_Os02g39840
Target Sequence 
CTTATTACTGATGTCCTAACTGGGAATGTTACANTTGGTTATTTGTTACTCGGTAGTTGGCAGGTTTTGCCCTTTCAGTT
CGAGAAACTACAACACNTGAAGTTGAGGAACAGCTTTTTGTGAGCTGTATTTTTTTGCAAGGTCAGATGACTGCTAATCA
TATTATTGGATAATGAAGTAAAGAAAAGCTATAGATTTAGCTCTGATAACACCNGTAACAATACCTCGATGGTGGTTTAC
GCGGCTACTCCTCTTGTAACAGGTACTGCTGCGTGTTGGCAAGCATACTTGTTAGCGTTGGGTACAACTGAGTTCATAAT
TTAGTCGAAAGTTGAGATCTGATGTAATTCTTCCAGCCAATCTCATGACAATTTATTCGAGATTTGTTTGGTTCAATTTA
ACCTGTCAATGCAGTCTTATCTTCTCATCTGAGGCTGTGAGGTAGGATATGGGAATTCGTACTGTTTGCATTTCGCGCTC
TTGCGTGTCATGAATCTGATGGCCTCATTGTTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis