Browse Element(s) Details


OsAffx.24652.1.S1_s_at

Description tigr:9630.m03830
TID=OsAffx.24652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3976411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein
LOC_Os02g39764OsAffx.24652.1.S1_s_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55114.1.S1_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55705.1.S1_at10/112+24019287..24026406expressed protein
LOC_Os02g39764OsAffx.24652.1.S1_x_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.24351.1.A1_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.30311.1.S1_at1/112+24019287..24026406expressed protein
LOC_Os02g39780OsAffx.5954.5.S1_x_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.30294.1.S1_at7/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.3.S1_x_at4/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39780OsAffx.5954.1.S1_x_at1/112+24028487..24035461retrotransposon protein, putative, unclassified
LOC_Os02g39790Os.7972.1.S1_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39790Os.7972.1.S2_at11/112+24039375..24042429S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os02g39800NANA2+24044257..24047199SET domain containing protein
LOC_Os02g39810NANA2+24051352..24052178hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24652.1.S1_s_at--1091--10111Chr02:24025019..24025043 (25 bp)
TATGTCTTGCTTATCAGTTCAGTTT
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--1157--751Chr02:24025018..24025042 (25 bp)
ATGTCTTGCTTATCAGTTCAGTTTG
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--648--8731Chr02:24025017..24025041 (25 bp)
TGTCTTGCTTATCAGTTCAGTTTGT
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--75--7151Chr02:24025016..24025040 (25 bp)
GTCTTGCTTATCAGTTCAGTTTGTT
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--86--9591Chr02:24025015..24025039 (25 bp)
TCTTGCTTATCAGTTCAGTTTGTTC
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--681--3631Chr02:24025014..24025038 (25 bp)
CTTGCTTATCAGTTCAGTTTGTTCT
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--534--10711Chr02:24025013..24025037 (25 bp)
TTGCTTATCAGTTCAGTTTGTTCTT
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--733--9071Chr02:24025012..24025036 (25 bp)
TGCTTATCAGTTCAGTTTGTTCTTC
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--865--4891Chr02:24025011..24025035 (25 bp)
GCTTATCAGTTCAGTTTGTTCTTCT
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--444--3671Chr02:24025010..24025034 (25 bp)
CTTATCAGTTCAGTTTGTTCTTCTC
LOC_Os02g39764
OsAffx.24652.1.S1_s_at--64--10431Chr02:24025009..24025033 (25 bp)
TTATCAGTTCAGTTTGTTCTTCTCA
LOC_Os02g39764
Target Sequence 
TATGTCTTGCTTATCAGTTCAGTTTGTTCTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24652.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis