Browse Element(s) Details


Os.27652.1.S1_at

Description gb:AK099736.1
DB_XREF= gi:32984945
TID=Os.27652.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090G20, full insert sequence.
FL= gb:AK099736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3974010/11Tab2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39700Os.26857.1.S1_at11/112+23974609..23980789La domain containing protein, expressed
LOC_Os02g39710Os.15757.1.S1_at11/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39710OsAffx.11619.1.S1_at1/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_s_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720Os.12017.1.S1_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_at7/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein
LOC_Os02g39764OsAffx.24652.1.S1_s_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55114.1.S1_at11/112+24019287..24026406expressed protein
LOC_Os02g39764Os.55705.1.S1_at10/112+24019287..24026406expressed protein
LOC_Os02g39764OsAffx.24652.1.S1_x_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.24351.1.A1_at7/112+24019287..24026406expressed protein
LOC_Os02g39764Os.30311.1.S1_at1/112+24019287..24026406expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27652.1.S1_at--278--5911Chr02:23996135..23996159 (25 bp)
GAGCTCGATGAGAACACCTTGATAC
LOC_Os02g39740
Os.27652.1.S1_at--823--10691Chr02:23996166..23996190 (25 bp)
TTGCCGTGGAATCTTCGCGAGCCAA
LOC_Os02g39740
Os.27652.1.S1_at--201--3771NONE
CTCTAGCTGCTTGGATGAACGGTCT
NONE
Os.27652.1.S1_at--34--5471Chr02:23996841..23996865 (25 bp)
GAACGGTCTAGAGATCTGCTCAATG
LOC_Os02g39740
Os.27652.1.S1_at--687--971Chr02:23997023..23997047 (25 bp)
AGGAGAACCTCAACTCCGACGGGTG
LOC_Os02g39740
Os.27652.1.S1_at--71--1931Chr02:23997041..23997065 (25 bp)
ACGGGTGCGTTGGTTTCTGGCTCCT
LOC_Os02g39740
Os.27652.1.S1_at--405--4531Chr02:23997081..23997105 (25 bp)
GCCGCCTGTATGATTGATCCTGCAG
LOC_Os02g39740
Os.27652.1.S1_at--774--10751Chr02:23997094..23997118 (25 bp)
TTGATCCTGCAGTCCGGAGAGTAGC
LOC_Os02g39740
Os.27652.1.S1_at--827--9531Chr02:23997120..23997144 (25 bp)
TCTAGCAGCGTGTGTTTCCATCAAA
LOC_Os02g39740
Os.27652.1.S1_at--1094--7431Chr02:23997152..23997176 (25 bp)
GTGTAGTATGTGTAGCTCCAGTAAC
LOC_Os02g39740
Os.27652.1.S1_at--378--3091Chr02:23997186..23997210 (25 bp)
AATACAAGATCCCTTCCATCTGTAC
LOC_Os02g39740
Target Sequence 
GAGCTCGATGAGAACACCTTGATACCTGGGGTTGCCGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGG
TCTAGAGATCTGCTCAATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGACCAGGTACGTCT
ACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGGCGGCGAAGAAGGCCTGTGGCGGCCTG
CACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCC
TGTATGATTGATCCTGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTATGTGTAG
CTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis