Browse Element(s) Details


Os.12017.1.S1_at

Description gb:AK099572.1
DB_XREF= gi:32984781
TID=Os.12017.1
CNT=102
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035H21, full insert sequence.
FL= gb:AK099572.1 gb:AK104726.1 gb:AK060088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3972011/11splicing factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39670NANA2+23960206..23962653retrotransposon, putative, centromere-specific, expressed
LOC_Os02g39680NANA2+23964108..23966213retrotransposon, putative, centromere-specific
LOC_Os02g39689NANA2+23967783..23968090NA
LOC_Os02g39700Os.26857.1.S1_at11/112+23974609..23980789La domain containing protein, expressed
LOC_Os02g39710Os.15757.1.S1_at11/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39710OsAffx.11619.1.S1_at1/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_s_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720Os.12017.1.S1_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_at7/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12017.1.S1_at--825--3351Chr02:23987007..23987031 (25 bp)
CACCTCCTCGTGAGCGAAGCTACAG
LOC_Os02g39720
Os.12017.1.S1_at--120--5411Chr02:23986992..23987016 (25 bp)
GAAGCTACAGCAGATCACCAGCACA
LOC_Os02g39720
Os.12017.1.S1_at--41--9871Chr02:23986987..23987011 (25 bp)
TACAGCAGATCACCAGCACAGCCAG
LOC_Os02g39720
Os.12017.1.S1_at--192--5131Chr02:23986972..23986996 (25 bp)
GCACAGCCAGCCAACCGCGAGGAGT
LOC_Os02g39720
Os.12017.1.S1_at--133--8031Chr02:23986952..23986976 (25 bp)
GGAGTCCCCCTACGCAAATAACGCG
LOC_Os02g39720
Os.12017.1.S1_at--1149--5091Chr02:23986939..23986963 (25 bp)
GCAAATAACGCGTAACCCGCCTAGT
LOC_Os02g39720
Os.12017.1.S1_at--232--9791Chr02:23986927..23986951 (25 bp)
TAACCCGCCTAGTTCCAATTTGCTG
LOC_Os02g39720
Os.12017.1.S1_at--319--4171Chr02:23986922..23986946 (25 bp)
CGCCTAGTTCCAATTTGCTGGAAAT
LOC_Os02g39720
Os.12017.1.S1_at--892--4211Chr02:23986787..23986811 (25 bp)
CCGCCGCTGCTGATACAATTGTTGA
LOC_Os02g39720
Os.12017.1.S1_at--440--1531Chr02:23986762..23986786 (25 bp)
AGCAGGAGCCTAGCGTTTTGGTCGA
LOC_Os02g39720
Os.12017.1.S1_at--868--3471Chr02:23986760..23986784 (25 bp)
CAGGAGCCTAGCGTTTTGGTCGACT
LOC_Os02g39720
Target Sequence 
CACCTCCTCGTGAGCGAAGCTACAGCAGATCACCAGCACAGCCAGCCAACCGCGAGGAGTCCCCCTACGCAAATAACGCG
TAACCCGCCTAGTTCCAATTTGCTGGAAATGTTAGGGGGGCTCGGTGTGTTTTTGTAAGCGCTTGTGTTATGGAGTCTTG
AAAAGCTATAGGGATTGAGTATGTTCTTCGGAAGCATTTGTGTACCCTTCGGGAAAAACCCCGCCGCTGCTGATACAATT
GTTGAAGCAGGAGCCTAGCGTTTTGGTCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis