Browse Element(s) Details


Os.15757.1.S1_at

Description gb:AK058536.1
DB_XREF= gi:32968554
TID=Os.15757.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-B01, full insert sequence.
FL= gb:AK058536.1 gb:AK100097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3971011/11CONSTANS-like protein CO5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39670NANA2+23960206..23962653retrotransposon, putative, centromere-specific, expressed
LOC_Os02g39680NANA2+23964108..23966213retrotransposon, putative, centromere-specific
LOC_Os02g39689NANA2+23967783..23968090NA
LOC_Os02g39700Os.26857.1.S1_at11/112+23974609..23980789La domain containing protein, expressed
LOC_Os02g39710Os.15757.1.S1_at11/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39710OsAffx.11619.1.S1_at1/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_s_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720Os.12017.1.S1_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_at7/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15757.1.S1_at--1130--9411Chr02:23985098..23985122 (25 bp)
TCGTGCCGTCGTTCTGAGGAAGGAC
LOC_Os02g39710
Os.15757.1.S1_at--113--5011Chr02:23985209..23985233 (25 bp)
GCATGGCCCCGTGTGACATGAATAA
LOC_Os02g39710
Os.15757.1.S1_at--319--7031Chr02:23985237..23985261 (25 bp)
GTACAGTAGTTTTTCATCCATGGAC
LOC_Os02g39710
Os.15757.1.S1_at--929--9591Chr02:23985250..23985274 (25 bp)
TCATCCATGGACGTAGTATTCTATT
LOC_Os02g39710
Os.15757.1.S1_at--607--10231Chr02:23985271..23985295 (25 bp)
TATTGTACTCCTTGTACTCCTACTA
LOC_Os02g39710
Os.15757.1.S1_at--300--9571Chr02:23985300..23985324 (25 bp)
TCTTCTGCCTAACCAAGGCTTGTAC
LOC_Os02g39710
Os.15757.1.S1_at--718--911Chr02:23985315..23985339 (25 bp)
AGGCTTGTACATTACCATGGGAGTA
LOC_Os02g39710
Os.15757.1.S1_at--367--9911Chr02:23985338..23985362 (25 bp)
TAGCTGTTTTTGCAACCGTGACCAT
LOC_Os02g39710
Os.15757.1.S1_at--378--4251Chr02:23985353..23985377 (25 bp)
CCGTGACCATGGTTCAGTGCTTCAA
LOC_Os02g39710
Os.15757.1.S1_at--977--3451Chr02:23985367..23985391 (25 bp)
CAGTGCTTCAAGTTCAAGGGCGTTA
LOC_Os02g39710
Os.15757.1.S1_at--784--7571Chr02:23985384..23985408 (25 bp)
GGGCGTTAATGTTACTGTCCATTCT
LOC_Os02g39710
Target Sequence 
TCGTGCCGTCGTTCTGAGGAAGGACGTACGCACGGTACGGCGAGTCGGCGACGTGCGCCGTCGTAATTTTGGCGCGCCCC
GTGCGCGCGTGCATGCGTGCGTGTGTGCGACGCATGGCCCCGTGTGACATGAATAATATGTACAGTAGTTTTTCATCCAT
GGACGTAGTATTCTATTGTACTCCTTGTACTCCTACTACTCCTCTTCTGCCTAACCAAGGCTTGTACATTACCATGGGAG
TAGCTGTTTTTGCAACCGTGACCATGGTTCAGTGCTTCAAGTTCAAGGGCGTTAATGTTACTGTCCATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis