Browse Element(s) Details


OsAffx.2920.1.S1_s_at

Description tigr:9630.m03825
TID=OsAffx.2920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RSZp22 splicing factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3972011/11splicing factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39670NANA2+23960206..23962653retrotransposon, putative, centromere-specific, expressed
LOC_Os02g39680NANA2+23964108..23966213retrotransposon, putative, centromere-specific
LOC_Os02g39689NANA2+23967783..23968090NA
LOC_Os02g39700Os.26857.1.S1_at11/112+23974609..23980789La domain containing protein, expressed
LOC_Os02g39710Os.15757.1.S1_at11/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39710OsAffx.11619.1.S1_at1/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_s_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720Os.12017.1.S1_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_at7/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2920.1.S1_s_at--916--10351Chr02:23986611..23986635 (25 bp)
TTTTTGCTTGTTGCGGATGCCGTAA
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--653--7931Chr02:23986579..23986603 (25 bp)
GGATTACACATGCTTCTGGATGTCT
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--1030--8551Chr02:23986563..23986587 (25 bp)
TGGATGTCTCCACTGCATCTGGATG
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--272--491Chr02:23986547..23986571 (25 bp)
ATCTGGATGCGCTGTGGTCACCGTG
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--161--4351Chr02:23986510..23986534 (25 bp)
CCAGGTTCACAGCTCTTCTGGAGCA
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--963--1571Chr02:23986486..23986510 (25 bp)
AGCTCACATATACTCCTACAACATT
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--611--131Chr02:23986464..23986488 (25 bp)
ATTCACTGTATCATGCATCGCGTCA
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--303--7111Chr02:23986443..23986467 (25 bp)
GTCACCATTGCCATGATCACATGCG
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--1075--6471Chr02:23986379..23986403 (25 bp)
GATACGGCGCTTCACATGGCTTTGT
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--907--7431Chr02:23986345..23986369 (25 bp)
GTGTACGCTAGTACCGAGGTCACAT
LOC_Os02g39720
OsAffx.2920.1.S1_s_at--115--6151Chr02:23986330..23986354 (25 bp)
GAGGTCACATGGTTGCACTACGCGG
LOC_Os02g39720
Target Sequence 
TTTTTGCTTGTTGCGGATGCCGTAATATCAGAGGATTACACATGCTTCTGGATGTCTCCACTGCATCTGGATGCGCTGTG
GTCACCGTGCTGCGCCACTTTCCAGGTTCACAGCTCTTCTGGAGCAGCTCACATATACTCCTACAACATTCACTGTATCA
TGCATCGCGTCACCATTGCCATGATCACATGCGCTACATGTGTACCACCCCCACACCCGGCACGGGCACACCGATACGGC
GCTTCACATGGCTTTGTGCCAAAGCGGTGTACGCTAGTACCGAGGTCACATGGTTGCACTACGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2920.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis