Browse Element(s) Details


OsAffx.7285.1.S1_at

Description tigr:9639.m03033
TID=OsAffx.7285.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3331010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33270Os.11465.1.S1_at11/1111+19173506..19176575xyloglucan endotransglucosylase/hydrolase precursor, putative, expressed
LOC_Os11g33280Os.32823.2.S1_s_at4/1111+19177456..19182280hypothetical protein
LOC_Os11g33290Os.35344.3.S1_x_at9/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.2.S1_s_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290Os.35344.18.S1_x_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.3.S1_x_at6/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.5.S1_x_at4/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.1.S1_s_at2/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33300OsAffx.19143.1.S1_at11/1111+19193297..19194862O-methyltransferase family protein
LOC_Os11g33310OsAffx.7285.1.S1_at10/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33310OsAffx.24652.1.S1_x_at1/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33320Os.22939.1.A1_at4/1111+19205395..19207533F-box domain containing protein, expressed
LOC_Os11g33330Os.7486.1.S1_at11/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed
LOC_Os11g33330Os.51301.1.S1_x_at5/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.25454.1.S1_at11/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.51301.1.S1_x_at3/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7285.1.S1_at--314--5651Chr11:19200599..19200623 (25 bp)
GACAGAATTCGAGCTCACCAACTAT
LOC_Os11g33310
OsAffx.7285.1.S1_at--450--6491Chr11:19200572..19200596 (25 bp)
GATACCGATTGTGCTTGCCGAATGC
LOC_Os11g33310
OsAffx.7285.1.S1_at--409--5891Chr11:19200523..19200547 (25 bp)
GAGCTGGTGTCATTCTCGGATTGTT
LOC_Os11g33310
OsAffx.7285.1.S1_at--755--8771Chr11:19200502..19200526 (25 bp)
TGTTTGAGCTATGTCTCCACTGAGC
LOC_Os11g33310
OsAffx.7285.1.S1_at--230--3111Chr11:19200214..19200238 (25 bp)
AATATCAGCGGAATCCTTCGCCTGG
LOC_Os11g33310
OsAffx.7285.1.S1_at--755--8491Chr11:19200192..19200216 (25 bp)
TGGCTTCGCTACTGGAGATGGCACC
LOC_Os11g33310
OsAffx.7285.1.S1_at--613--271NONE
ATATGTACTGTCCTAGTGCACCGAT
NONE
OsAffx.7285.1.S1_at--13--7471Chr11:19199935..19199959 (25 bp)
GTGTGCACAAGCATCTCAGGACTGT
LOC_Os11g33310
OsAffx.7285.1.S1_at--1086--91Chr11:19199858..19199882 (25 bp)
ATTCTTAGGAGTGCACCCAATCTTG
LOC_Os11g33310
OsAffx.7285.1.S1_at--35--10751Chr11:19199836..19199860 (25 bp)
TTGACCGTCTGATCGTTGATCCGAT
LOC_Os11g33310
OsAffx.7285.1.S1_at--1047--4731Chr11:19199768..19199792 (25 bp)
GCTGATCTGATGCTCGTTCGAAGGA
LOC_Os11g33310
Target Sequence 
GACAGAATTCGAGCTCACCAACTATCCGATACCGATTGTGCTTGCCGAATGCCTGAACTTGTCGGTGGCGACGATCGAGC
TGGTGTCATTCTCGGATTGTTTGAGCTATGTCTCCACTGAGCTTCCAGCTGGTGGTCTTCATCGCGTGCAGGATCGTCTC
TCCATCAACATGACAGTCAGAACTGAGGGAAGTTCGGACAATATCAGCGGAATCCTTCGCCTGGCTTCGCTACTGGAGAT
GGCACCATGTCTGGAAGAGCTGGAACTCAATATGTACTGTCCTAGTGCACCGATCTACACAAAGCGTGGTCAGTTAGATA
AATTAAGTTCAGTGTGTGTGCACAAGCATCTCAGGACTGTACGCATGACAGGATTCGATAGTACACGTGGACAGCTTGAA
CTGGCGTTCCAAATTCTTAGGAGTGCACCCAATCTTGACCGTCTGATCGTTGATCCGATGGTCAGGGTTGCATGGAGCCT
GCGCCTTGATTGGTCGGAGCAAGCTGATCTGATGCTCGTTCGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis