Browse Element(s) Details


Os.11465.1.S1_at

Description gb:AK061093.1
DB_XREF= gi:32971111
TID=Os.11465.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.11465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full insert sequence.
FL= gb:AK071574.1 gb:AK061093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3327011/11xyloglucan endotransglucosylase/hydrolase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33240Os.14102.1.S1_at10/1111+19147806..19154339Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os11g33250Os.53147.1.S1_at11/1111+19155308..19157263expressed protein
LOC_Os11g33260NANA11+19158943..19161283transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33270Os.11465.1.S1_at11/1111+19173506..19176575xyloglucan endotransglucosylase/hydrolase precursor, putative, expressed
LOC_Os11g33280Os.32823.2.S1_s_at4/1111+19177456..19182280hypothetical protein
LOC_Os11g33290Os.35344.3.S1_x_at9/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.2.S1_s_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290Os.35344.18.S1_x_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.3.S1_x_at6/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.5.S1_x_at4/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.1.S1_s_at2/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33300OsAffx.19143.1.S1_at11/1111+19193297..19194862O-methyltransferase family protein
LOC_Os11g33310OsAffx.7285.1.S1_at10/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33310OsAffx.24652.1.S1_x_at1/1111+19199709..19201822F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009612biological_processresponse to mechanical stimulus
GO:0009645biological_processresponse to low light intensity
GO:0009733biological_processresponse to auxin stimulus
GO:0009826biological_processunidimensional cell growth
GO:0005576cellular_componentextracellular region
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11465.1.S1_at--435--1391Chr11:19176162..19176186 (25 bp)
AGACGCACACCATCTACAACTACTG
LOC_Os11g33270
Os.11465.1.S1_at--1142--2011Chr11:19176180..19176204 (25 bp)
ACTACTGCGACGACCGCGAACGCTA
LOC_Os11g33270
Os.11465.1.S1_at--556--4611Chr11:19176237..19176261 (25 bp)
GCGACGCCTGAGATCTCATCGAGAT
LOC_Os11g33270
Os.11465.1.S1_at--884--9371Chr11:19176255..19176279 (25 bp)
TCGAGATCTGTGATCGATGCTTGCT
LOC_Os11g33270
Os.11465.1.S1_at--62--6391Chr11:19176266..19176290 (25 bp)
GATCGATGCTTGCTGGCCGTCCGAT
LOC_Os11g33270
Os.11465.1.S1_at--97--7451Chr11:19176319..19176343 (25 bp)
GTGTACGGCTACGATTAATCATGAT
LOC_Os11g33270
Os.11465.1.S1_at--653--9411Chr11:19176431..19176455 (25 bp)
TCGTCGTGCCAGGTGTGCTGAATTG
LOC_Os11g33270
Os.11465.1.S1_at--247--4571Chr11:19176457..19176481 (25 bp)
GCGCGTGATATATGTATTGCCAAAT
LOC_Os11g33270
Os.11465.1.S1_at--1080--91Chr11:19176483..19176507 (25 bp)
ATTTTGGTGGTTTCGCTTGTACTAT
LOC_Os11g33270
Os.11465.1.S1_at--1055--311Chr11:19176512..19176536 (25 bp)
ATACGCGCGCTGTGATCGATTTCGA
LOC_Os11g33270
Os.11465.1.S1_at--834--4031Chr11:19176528..19176552 (25 bp)
CGATTTCGATCGGTCAGAGTTAATT
LOC_Os11g33270
Target Sequence 
AGACGCACACCATCTACAACTACTGCGACGACCGCGAACGCTACCCCGCCATGTCGCCCGAGTGCCACCGCGACCGCGAC
GCCTGAGATCTCATCGAGATCTGTGATCGATGCTTGCTGGCCGTCCGATGGATGGATGGATGGATGGGGATGAGTACGTG
TACGGCTACGATTAATCATGATTTGAGTGCGTGCAGTTAATTAATTAATGGGTAACGTTTTGGGGGTAATTTGGGCTTGA
ATTGATTGTATGTATGCATGTATGTATCGTCGTCGTGCCAGGTGTGCTGAATTGGGCGCGTGATATATGTATTGCCAAAT
TATTTTGGTGGTTTCGCTTGTACTATATATATACGCGCGCTGTGATCGATTTCGATCGGTCAGAGTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis