Browse Element(s) Details


Os.53147.1.S1_at

Description gb:AK071015.1
DB_XREF= gi:32981038
TID=Os.53147.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081E02, full insert sequence.
FL= gb:AK071015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3325011/11expressed protein
LOC_Os11g332201/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33190Os.56360.1.S1_at9/1111+19133801..19136541F-box domain containing protein, expressed
LOC_Os11g33200OsAffx.19140.1.S1_x_at11/1111+19137846..19138231hypothetical protein
LOC_Os11g33200OsAffx.19140.1.S1_at10/1111+19137846..19138231hypothetical protein
LOC_Os11g33210OsAffx.19141.1.S1_at11/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33210OsAffx.4559.1.S1_at1/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33220OsAffx.7284.1.S1_at10/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.53147.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.56360.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33230NANA11+19146055..19146838hypothetical protein
LOC_Os11g33240Os.14102.1.S1_at10/1111+19147806..19154339Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os11g33250Os.53147.1.S1_at11/1111+19155308..19157263expressed protein
LOC_Os11g33260NANA11+19158943..19161283transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33270Os.11465.1.S1_at11/1111+19173506..19176575xyloglucan endotransglucosylase/hydrolase precursor, putative, expressed
LOC_Os11g33280Os.32823.2.S1_s_at4/1111+19177456..19182280hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53147.1.S1_at--783--6411Chr11:19156730..19156754 (25 bp)
GATCTCCTGCGAGCGAGACAGCAAG
LOC_Os11g33250
Os.53147.1.S1_at--522--5811Chr11:19156834..19156858 (25 bp)
GACGCCGGTGAACTCCATGGACGAA
LOC_Os11g33250
Os.53147.1.S1_at--14--10651Chr11:19156892..19156916 (25 bp)
TTCGCCTGCTTGAAGAACTCGCTGA
LOC_Os11g33250
Os.53147.1.S1_at--1023--9411Chr11:19156936..19156960 (25 bp)
TCGGATGGATCGACCCAACTGCATT
LOC_Os11g33250
Os.53147.1.S1_at--688--2551Chr11:19156952..19156976 (25 bp)
AACTGCATTGGCGTCAAGCTGATCA
LOC_Os11g33250
Os.53147.1.S1_at--182--5971Chr11:19156988..19157012 (25 bp)
GAGAACGCGATTCACCTCGAAGAGA
LOC_Os11g33250
Os.53147.1.S1_at--188--1291Chr11:19157010..19157034 (25 bp)
AGATGCGCATCGACGGTGGAAATCA
LOC_Os11g33250
Os.53147.1.S1_at--1052--5092Chr11:19157041..19157065 (25 bp)
GCACGATCACATCAACCACATGGTT
LOC_Os11g33250
Os.53147.1.S1_at--554--6411Chr11:19157074..19157098 (25 bp)
GATCTCCGATTCATCGTCAGCGAAA
LOC_Os11g33250
Os.53147.1.S1_at--271--6091Chr11:19157137..19157161 (25 bp)
GAGTACGCCACGCTTTAGATTATTA
LOC_Os11g33250
Os.53147.1.S1_at--256--6551Chr11:19157154..19157178 (25 bp)
GATTATTACCCCTTGAGAGACGGTG
LOC_Os11g33250
Target Sequence 
GATCTCCTGCGAGCGAGACAGCAAGCCGACCTCGCCGAGTCTCTCGATCGCTTCGCTCGCCGCCGCCGACGCAAACCCAA
TCCTCCGCCGCCGCCGCCGCCGCCGACGCCGGTGAACTCCATGGACGAACACCTGAGCATCGTAGGATTGAGTGGCCGAT
CCTTCGCCTGCTTGAAGAACTCGCTGAGAAGATTCGTAATCCAGTTTCGGATGGATCGACCCAACTGCATTGGCGTCAAG
CTGATCAAGTTCTTCGCCGAGAACGCGATTCACCTCGAAGAGATGCGCATCGACGGTGGAAATCAGAGGATGCACGATCA
CATCAACCACATGGTTGAGGGATGGATCTCCGATTCATCGTCAGCGAAAAAGAGGGCGAATCACGAGAGTTCGCAGGGTA
TCGACGCGAGTACGCCACGCTTTAGATTATTACCCCTTGAGAGACGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis