Browse Element(s) Details


OsAffx.19141.1.S1_at

Description tigr:9639.m03024
TID=OsAffx.19141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3321011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33150Os.46808.2.S1_x_at4/1111+19116876..19117982hypothetical protein
LOC_Os11g33160NANA11+19126557..19127048hypothetical protein
LOC_Os11g33170OsAffx.19139.1.S1_at11/1111+19127282..19127959hypothetical protein
LOC_Os11g33180NANA11+19128158..19130025F-box domain containing protein
LOC_Os11g33190Os.56360.1.S1_at9/1111+19133801..19136541F-box domain containing protein, expressed
LOC_Os11g33200OsAffx.19140.1.S1_x_at11/1111+19137846..19138231hypothetical protein
LOC_Os11g33200OsAffx.19140.1.S1_at10/1111+19137846..19138231hypothetical protein
LOC_Os11g33210OsAffx.19141.1.S1_at11/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33210OsAffx.4559.1.S1_at1/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33220OsAffx.7284.1.S1_at10/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.53147.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.56360.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33230NANA11+19146055..19146838hypothetical protein
LOC_Os11g33240Os.14102.1.S1_at10/1111+19147806..19154339Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os11g33250Os.53147.1.S1_at11/1111+19155308..19157263expressed protein
LOC_Os11g33260NANA11+19158943..19161283transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19141.1.S1_at--989--9291Chr11:19140614..19140638 (25 bp)
TCCGCCGCCTCGAGTTAGGAGGATG
LOC_Os11g33210
OsAffx.19141.1.S1_at--105--1211Chr11:19140626..19140650 (25 bp)
AGTTAGGAGGATGCCTCCCCGACGA
LOC_Os11g33210
OsAffx.19141.1.S1_at--931--5831Chr11:19140697..19140721 (25 bp)
GACCTCGCGCCAAACCTGGAGGCGT
LOC_Os11g33210
OsAffx.19141.1.S1_at--735--2371Chr11:19140708..19140732 (25 bp)
AAACCTGGAGGCGTTGTCGCTCGTC
LOC_Os11g33210
OsAffx.19141.1.S1_at--908--6611Chr11:19140720..19140744 (25 bp)
GTTGTCGCTCGTCTTCCACCCAGAG
LOC_Os11g33210
OsAffx.19141.1.S1_at--1013--9951Chr11:19140775..19140799 (25 bp)
TACCGCGCATACTGTTACCACAAGG
LOC_Os11g33210
OsAffx.19141.1.S1_at--252--4951Chr11:19140781..19140805 (25 bp)
GCATACTGTTACCACAAGGAGGAGG
LOC_Os11g33210
OsAffx.19141.1.S1_at--987--8011Chr11:19140801..19140825 (25 bp)
GGAGGAGCTCCATGACAAGCACCTC
LOC_Os11g33210
OsAffx.19141.1.S1_at--842--9251Chr11:19140824..19140848 (25 bp)
TCCTCAGATACAACCGGCACAGCGT
LOC_Os11g33210
OsAffx.19141.1.S1_at--992--1251Chr11:19140829..19140853 (25 bp)
AGATACAACCGGCACAGCGTCCTCG
LOC_Os11g33210
OsAffx.19141.1.S1_at--360--8851Chr11:19140989..19141013 (25 bp)
TGATCCGTGAGCTGAGGTGCGAGCT
LOC_Os11g33210
Target Sequence 
TCCGCCGCCTCGAGTTAGGAGGATGCCTCCCCGACGACGACGACGACGACGGCACCATCTTCGCCGCACTGATCAGGCTC
CTCGACCTCGCGCCAAACCTGGAGGCGTTGTCGCTCGTCTTCCACCCAGAGCCTCTCGACGACGGCGACGACGACGACGG
CTACCGCGCATACTGTTACCACAAGGAGGAGGAGCTCCATGACAAGCACCTCCTCAGATACAACCGGCACAGCGTCCTCG
CCGCGCCGACGAGCGGCGCCGCCATGGTGGCGCCGGCCTGCCTGAGGAGGCGGGTGAGGGAGATCAACCTGGTGCACTAC
CAGGGCGGCACGGTGCAGAGGGCGCTGGCCATGTACCTGCTCCGGAGCGCGGCGGTGATCCGTGAGCTGAGGTGCGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis