Browse Element(s) Details


Os.56360.1.S1_at

Description gb:AK109924.1
DB_XREF= gi:32995133
TID=Os.56360.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D12, full insert sequence.
FL= gb:AK109924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g331909/11F-box domain containing protein, expressed
LOC_Os11g332201/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33134Os.54924.1.S1_at10/1111+19113504..19114166expressed protein
LOC_Os11g33150Os.46808.2.S1_x_at4/1111+19116876..19117982hypothetical protein
LOC_Os11g33160NANA11+19126557..19127048hypothetical protein
LOC_Os11g33170OsAffx.19139.1.S1_at11/1111+19127282..19127959hypothetical protein
LOC_Os11g33180NANA11+19128158..19130025F-box domain containing protein
LOC_Os11g33190Os.56360.1.S1_at9/1111+19133801..19136541F-box domain containing protein, expressed
LOC_Os11g33200OsAffx.19140.1.S1_x_at11/1111+19137846..19138231hypothetical protein
LOC_Os11g33200OsAffx.19140.1.S1_at10/1111+19137846..19138231hypothetical protein
LOC_Os11g33210OsAffx.19141.1.S1_at11/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33210OsAffx.4559.1.S1_at1/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33220OsAffx.7284.1.S1_at10/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.53147.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.56360.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33230NANA11+19146055..19146838hypothetical protein
LOC_Os11g33240Os.14102.1.S1_at10/1111+19147806..19154339Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os11g33250Os.53147.1.S1_at11/1111+19155308..19157263expressed protein
LOC_Os11g33260NANA11+19158943..19161283transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56360.1.S1_at--188--5631Chr11:19136058..19136082 (25 bp)
GACAAAGATCTCCTGCATGAACCAA
LOC_Os11g33190
Os.56360.1.S1_at--1130--8971Chr11:19136075..19136099 (25 bp)
TGAACCAAAGCCTGGACGATGCCGG
LOC_Os11g33190
Os.56360.1.S1_at--899--591NONE
ATGCCGGCGGTGACATCCGTGGATT
NONE
Os.56360.1.S1_at--898--2091NONE
ACATCCGTGGATTGAGCGGCCGATC
NONE
Os.56360.1.S1_at--659--4471Chr11:19136134..19136158 (25 bp)
GCCTGCTTGCGAAGCTCGTTGACAA
LOC_Os11g33190
Os.56360.1.S1_at--140--6631Chr11:19136161..19136185 (25 bp)
GTTGGGATCCAGTTCCGGAACGACG
LOC_Os11g33190
Os.56360.1.S1_at--478--1231Chr11:19136171..19136195 (25 bp)
AGTTCCGGAACGACGAGCGCAGCTG
LOC_Os11g33190
Os.56360.1.S1_at--669--8491Chr11:19136194..19136218 (25 bp)
TGGCTTGGCGTCTCGCTGATCAAGT
LOC_Os11g33190
Os.56360.1.S1_at--46--4152Chr11:19144525..19144549 (25 bp)
CGCGGAGAACGCCATTTGCCTCGAG
LOC_Os11g33220
Os.56360.1.S1_at--1034--7971Chr11:19136276..19136300 (25 bp)
GGATGCGCGATCACATCAATCGTAG
LOC_Os11g33190
Os.56360.1.S1_at--1080--6311Chr11:19136333..19136357 (25 bp)
GATGCTTTAGAGTGTTACCGCTTGA
LOC_Os11g33190
Target Sequence 
GACAAAGATCTCCTGCATGAACCAAAGCCTGGACGATGCCGGCGGTGACATCCGTGGATTGAGCGGCCGATCCTTCGCCT
GCTTGCGAAGCTCGTTGACAAGGGTTGGGATCCAGTTCCGGAACGACGAGCGCAGCTGGCTTGGCGTCTCGCTGATCAAG
TTCTTCGCGGAGAACGCCATTTGCCTCGAGGAGATGCGCGTCGATGGAGGGAACGAGAGGATGCGCGATCACATCAATCG
TAGGGTTGAGAGATGGATCGTTGAGAGTGGCATGCGATGCTTTAGAGTGTTACCGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis