Browse Element(s) Details


Os.14102.1.S1_at

Description gb:AK072950.1
DB_XREF= gi:32982973
TID=Os.14102.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146L07, full insert sequence.
FL= gb:AK072950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3324010/11Citrate synthase 4, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33160NANA11+19126557..19127048hypothetical protein
LOC_Os11g33170OsAffx.19139.1.S1_at11/1111+19127282..19127959hypothetical protein
LOC_Os11g33180NANA11+19128158..19130025F-box domain containing protein
LOC_Os11g33190Os.56360.1.S1_at9/1111+19133801..19136541F-box domain containing protein, expressed
LOC_Os11g33200OsAffx.19140.1.S1_x_at11/1111+19137846..19138231hypothetical protein
LOC_Os11g33200OsAffx.19140.1.S1_at10/1111+19137846..19138231hypothetical protein
LOC_Os11g33210OsAffx.19141.1.S1_at11/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33210OsAffx.4559.1.S1_at1/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33220OsAffx.7284.1.S1_at10/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.53147.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.56360.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33230NANA11+19146055..19146838hypothetical protein
LOC_Os11g33240Os.14102.1.S1_at10/1111+19147806..19154339Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os11g33250Os.53147.1.S1_at11/1111+19155308..19157263expressed protein
LOC_Os11g33260NANA11+19158943..19161283transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33270Os.11465.1.S1_at11/1111+19173506..19176575xyloglucan endotransglucosylase/hydrolase precursor, putative, expressed
LOC_Os11g33280Os.32823.2.S1_s_at4/1111+19177456..19182280hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0006635biological_processfatty acid beta-oxidation
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0003878molecular_functionATP citrate synthase activity
GO:0004108molecular_functioncitrate (Si)-synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14102.1.S1_at--501--8071NONE
GGAGCATAGGCATAGGATCCCAGCT
NONE
Os.14102.1.S1_at--604--2171Chr11:19153991..19154015 (25 bp)
ACACCGCTGCTGTTAATTCTTCTAA
LOC_Os11g33240
Os.14102.1.S1_at--595--2531Chr11:19154050..19154074 (25 bp)
AACTCGAAACGTTCAGCCACATTTT
LOC_Os11g33240
Os.14102.1.S1_at--594--5351Chr11:19154105..19154129 (25 bp)
GAAGATGCTCTCGATCGGCTGGTAC
LOC_Os11g33240
Os.14102.1.S1_at--12--7851Chr11:19154125..19154149 (25 bp)
GGTACATTTTTGTAGCCATCGCTGT
LOC_Os11g33240
Os.14102.1.S1_at--472--4431Chr11:19154139..19154163 (25 bp)
GCCATCGCTGTTAGGATGCTCATAT
LOC_Os11g33240
Os.14102.1.S1_at--610--3571Chr11:19154159..19154183 (25 bp)
CATATAGTTAATCTGCCATTGGGCA
LOC_Os11g33240
Os.14102.1.S1_at--762--6671Chr11:19154202..19154226 (25 bp)
GTTGCTTAGAGCTTTATCCTTTGAT
LOC_Os11g33240
Os.14102.1.S1_at--635--5231Chr11:19154227..19154251 (25 bp)
GAATAACTTTTTCGAGCCTTCTAAG
LOC_Os11g33240
Os.14102.1.S1_at--65--10011Chr11:19154253..19154277 (25 bp)
TAGCTCGAGTTAACATACCAGTTGT
LOC_Os11g33240
Os.14102.1.S1_at--593--7511Chr11:19154276..19154300 (25 bp)
GTGGATTATGGCACATTTCTTCATT
LOC_Os11g33240
Target Sequence 
GGAGCATAGGCATAGGATCCCAGCTCATTTGGGACCGTGCTCTTGGTCTGCCGCTCGAAAGACCGAAGAGTGTCACCATG
GAGTGGCTGGAAAACCACTGCAAGAAGGCTGCTGCTTGAAGCTACACACGCCTACACCGCTGCTGTTAATTCTTCTAACA
ATTATCATCTTGGATGTTAATAACTGAGGATAAACTCGAAACGTTCAGCCACATTTTAATATTTTTTTNCCCAGGCCAAT
AACTAGAGGAAGATGCTCTCGATCGGCTGGTACATTTTTGTAGCCATCGCTGTTAGGATGCTCATATAGTTAATCTGCCA
TTGGGCAACAATGTGATTAGTTTAAGTTGCTTAGAGCTTTATCCTTTGATGAATAACTTTTTCGAGCCTTCTAAGTTAGC
TCGAGTTAACATACCAGTTGTGGATTATGGCACATTTCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis