Browse Element(s) Details


OsAffx.19143.1.S1_at

Description tigr:9639.m03032
TID=OsAffx.19143.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC079179 Putative o-methyltransferase ZRP4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3330011/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33270Os.11465.1.S1_at11/1111+19173506..19176575xyloglucan endotransglucosylase/hydrolase precursor, putative, expressed
LOC_Os11g33280Os.32823.2.S1_s_at4/1111+19177456..19182280hypothetical protein
LOC_Os11g33290Os.35344.3.S1_x_at9/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.2.S1_s_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290Os.35344.18.S1_x_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.3.S1_x_at6/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.5.S1_x_at4/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.1.S1_s_at2/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33300OsAffx.19143.1.S1_at11/1111+19193297..19194862O-methyltransferase family protein
LOC_Os11g33310OsAffx.7285.1.S1_at10/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33310OsAffx.24652.1.S1_x_at1/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33320Os.22939.1.A1_at4/1111+19205395..19207533F-box domain containing protein, expressed
LOC_Os11g33330Os.7486.1.S1_at11/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed
LOC_Os11g33330Os.51301.1.S1_x_at5/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19143.1.S1_at--690--651Chr11:19194295..19194319 (25 bp)
ATGAACGCGCACAGCTTCGTGGAGA
LOC_Os11g33300
OsAffx.19143.1.S1_at--619--5671Chr11:19194148..19194172 (25 bp)
GACATCAAGTGCACCGTGATGGACC
LOC_Os11g33300
OsAffx.19143.1.S1_at--317--3931Chr11:19194065..19194089 (25 bp)
CGGCGACATGTTCCAATCCATTCCA
LOC_Os11g33300
OsAffx.19143.1.S1_at--179--1631Chr11:19194041..19194062 (22 bp)
AGCGGACGCTGTTCTACTCAAATAC
LOC_Os11g33300
OsAffx.19143.1.S1_at--1144--3731Chr11:19193584..19194046 (25 bp)
CTCAAATACGTGTTGCACTGCTGGG
LOC_Os11g33300
OsAffx.19143.1.S1_at--263--5791Chr11:19193554..19193578 (25 bp)
GACGACTGCGTGAGGATTCTCCGGA
LOC_Os11g33300
OsAffx.19143.1.S1_at--642--111Chr11:19193539..19193563 (25 bp)
ATTCTCCGGAACTGCAGGGAGGCGA
LOC_Os11g33300
OsAffx.19143.1.S1_at--752--2891Chr11:19193491..19193515 (25 bp)
AAGGTGATCATAACGGAGCTGGTGC
LOC_Os11g33300
OsAffx.19143.1.S1_at--977--10651Chr11:19193404..19193428 (25 bp)
TTCCTCATGTGCATCAGTGGCGTCG
LOC_Os11g33300
OsAffx.19143.1.S1_at--7--4491Chr11:19193341..19193365 (25 bp)
GCCGGCTTCGGCGACTACAAGATCA
LOC_Os11g33300
OsAffx.19143.1.S1_at--1136--4591Chr11:19193331..19193355 (25 bp)
GCGACTACAAGATCACGCCGGTGTT
LOC_Os11g33300
Target Sequence 
ATGAACGCGCACAGCTTCGTGGAGAGCCAGCTGCTGATCGAGGCCGTCCTCAGGGACCACGCCGGCGTGTTCCGCGGGCT
GCGCTCGCTGGTCGACGTCGGCGGCGGCCACGGCGCGGTCGCCAAGGCCATCGCCGCGGCCTTCCCGGACATCAAGTGCA
CCGTGATGGACCTCCCCCACGTCGTCGCCGACGCCCCCGTCTCCGACGACGGCAACCTGCATCTCGTCGCCGGCGACATG
TTCCAATCCATTCCACCAGCGGACGCTGTTCTACTCAAATACGTGTTGCACTGCTGGGGAGACGACGACTGCGTGAGGAT
TCTCCGGAACTGCAGGGAGGCGATCCCGGCGAGGGAGGCCGGAGGGAAGGTGATCATAACGGAGCTGGTGCTGGGCTCGT
CGGCGGCGTCGCGCGACGCCAACGTGGCGGAGGCGGAGGACATGCACAGCCTCTTCCTCATGTGCATCAGTGGCGTCGGG
CGGGAGGAGCGCGAGTGGAGGGCCATCTTCTCCGACGCCGGCTTCGGCGACTACAAGATCACGCCGGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis